Search Results - "Hooft, Rob W.W"

The road to success: drawing parallels between 'road' and 'research data' infrastructures to foster understanding between service providers, funders and policymakers [version 1; peer review: 2 approved] by Hooft, Rob W.W., Martin, Corinne S.

“…Background: The work of data research infrastructure operators is poorly understood, yet the services they provide are used by millions of scientists across…”
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series of PDB related databases for everyday needs by Joosten, Robbie P, te Beek, Tim A.H, Krieger, Elmar, Hekkelman, Maarten L, Hooft, Rob W.W, Schneider, Reinhard, Sander, Chris, Vriend, Gert

“…The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the…”
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FAIR Principles: Interpretations and Implementation Considerations by Jacobsen, Annika, de Miranda Azevedo, Ricardo, Juty, Nick, Batista, Dominique, Coles, Simon, Cornet, Ronald, Courtot, Mélanie, Crosas, Mercè, Dumontier, Michel, Evelo, Chris T., Goble, Carole, Guizzardi, Giancarlo, Hansen, Karsten Kryger, Hasnain, Ali, Hettne, Kristina, Heringa, Jaap, Hooft, Rob W.W., Imming, Melanie, Jeffery, Keith G., Kaliyaperumal, Rajaram, Kersloot, Martijn G., Kirkpatrick, Christine R., Kuhn, Tobias, Labastida, Ignasi, Magagna, Barbara, McQuilton, Peter, Meyers, Natalie, Montesanti, Annalisa, van Reisen, Mirjam, Rocca-Serra, Philippe, Pergl, Robert, Sansone, Susanna-Assunta, da Silva Santos, Luiz Olavo Bonino, Schneider, Juliane, Strawn, George, Thompson, Mark, Waagmeester, Andra, Weigel, Tobias, Wilkinson, Mark D., Willighagen, Egon L., Wittenburg, Peter, Roos, Marco, Mons, Barend, Schultes, Erik

“…The FAIR principles have been widely cited, endorsed and adopted by a broad range of stakeholders since their publication in 2016. By intention, the 15 FAIR…”
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The road to success: drawing parallels between 'road' and 'research data' infrastructures to foster understanding between service providers, funders and policymakers [version 2; peer review: 2 approved] by Hooft, Rob W.W., Harrison, Elaine, Martin, Corinne S.

“…Background: The work of data research infrastructure operators is poorly understood, yet the services they provide are used by millions of scientists across…”
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Determination of absolute structure using Bayesian statistics on Bijvoet differences by Hooft, Rob W. W., Straver, Leo H., Spek, Anthony L.

“…A new probabilistic approach is introduced for the determination of the absolute structure of a compound which is known to be enantiopure based on Bijvoet‐pair…”
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Using the t-distribution to improve the absolute structure assignment with likelihood calculations by Hooft, Rob W. W., Straver, Leo H., Spek, Anthony L.

“…The previously described method for absolute structure determination [Hooft, Straver & Spek (2008). J. Appl. Cryst.41, 96–103] assumes a Gaussian error…”
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Bioinformatics in the Netherlands: the value of a nationwide community by van Gelder, Celia W G, Hooft, Rob W W, van Rijswijk, Merlijn N, van den Berg, Linda, Kok, Ruben G, Reinders, Marcel, Mons, Barend, Heringa, Jaap

“…Abstract This review provides a historical overview of the inception and development of bioinformatics research in the Netherlands. Rooted in theoretical…”
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Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures by Hooft, Rob W.W., Sander, Chris, Vriend, Gerrit

“…A method is presented that positions polar hydrogen atoms in protein structures by optimizing the total hydrogen bond energy. For this goal, an empirical…”
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Objectively judging the quality of a protein structure from a Ramachandran plot by Hooft, Rob W.W., Sander, Chris, Vriend, Gerrit

“…Motivation Statistical methods that compare observed and expected distributions of experimental observables provide powerful tools for the quality control of…”
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Probability plots based on Student's t-distribution by Hooft, Rob W. W., Straver, Leo H., Spek, Anthony L.

“…The validity of the normal distribution as an error model is commonly tested with a (half) normal probability plot. Real data often contain outliers. The use…”
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The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands by Eijssen, Lars, Evelo, Chris T., Kok, Ruben, Mons, Barend, Hooft, Rob W.W.

“…We describe the Data programme of the Dutch Techcentre for Life Sciences (DTL, www.dtls.nl). DTL is a new national organisation in scientific research that…”
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Top 10 metrics for life science software good practices [version 1; peer review: 2 approved] by Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jiménez, Rafael C, Leskošek, Brane, Olivier, Brett G, Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel

“…Metrics for assessing adoption of good development practices are a useful way to ensure that software is sustainable, reusable and functional…”
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The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands [version 1; peer review: 3 approved with reservations] by Eijssen, Lars, Evelo, Chris T, Kok, Ruben, Mons, Barend, Hooft, Rob

“…We describe a new national organisation in scientific research that facilitates life scientists with technologies and technological expertise in an era where…”
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Crystal Engineering of Melamine-Imide Complexes; Tuning the Stoichiometry by Steric Hindrance of the Imide Carbonyl Groups by Lange, Ronald F. M., Beijer, Felix H., Sijbesma, Rint P., Hooft, Rob W. W., Kooijman, Huub, Spek, Anthony L., Kroon, Jan, Meijer, E. W.

“…A defined melamine–imide ratio in cocrystals can be selected by changing the steric hindrance around the hydrogen‐bond acceptor sites of the imides…”
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Molecular dynamics study of conformational and anomeric equilibria in aqueous D-glucose by van Eijck, Bouke P, Hooft, Rob W. W, Kroon, Jan

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The structure of 1,6-diazacyclododecane-7,12-dione, a cyclic monomeric model of polyamide 46 by Vulić, Ivan, Hooft, Rob W. W., Kroon, Jan

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Improved coordinate reconstruction from stereo diagrams by Hooft, Rob W.W., Vriend, Gerrit

“…A program has been written that reconstructs three-dimensional coordinates for a protein structure given a stereo C α diagram. Initial three-dimensional…”
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Low-temperature, high-resolution crystal structure study of tricyclo[3.3.1.13,7]decan-2-ol (adamantanol-2) by Kanters, Jan A., Hooft, Rob W. W., Duisenberg, Albert J. M.

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