Search Results - "Hom, Erik F Y"

Niche engineering demonstrates a latent capacity for fungal-algal mutualism by Hom, Erik F. Y., Murray, Andrew W.

“…Mutualistic symbioses shape the evolution of species and ecosystems and catalyze the emergence of biological complexity, yet how such symbioses first form is…”
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Beyond pathogenesis: Detecting the full spectrum of ecological interactions in the virosphere by Jurburg, Stephanie D, Hom, Erik F Y, Chatzinotas, Antonis

“…The public perception of viruses has historically been negative. We are now at a stage where the development of tools to study viruses is at an all-time high,…”
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Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale by Oita, Shuzo, Ibáñez, Alicia, Lutzoni, François, Miadlikowska, Jolanta, Geml, József, Lewis, Louise A., Hom, Erik F. Y., Carbone, Ignazio, U’Ren, Jana M., Arnold, A. Elizabeth

“…Understanding how species-rich communities persist is a foundational question in ecology. In tropical forests, tree diversity is structured by edaphic factors,…”
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Fungi in the Marine Environment: Open Questions and Unsolved Problems by Amend, Anthony, Burgaud, Gaetan, Cunliffe, Michael, Edgcomb, Virginia P, Ettinger, Cassandra L, Gutiérrez, M H, Heitman, Joseph, Hom, Erik F Y, Ianiri, Giuseppe, Jones, Adam C, Kagami, Maiko, Picard, Kathryn T, Quandt, C Alisha, Raghukumar, Seshagiri, Riquelme, Mertixell, Stajich, Jason, Vargas-Muñiz, José, Walker, Allison K, Yarden, Oded, Gladfelter, Amy S

“…Terrestrial fungi play critical roles in nutrient cycling and food webs and can shape macroorganism communities as parasites and mutualists. Although estimates…”
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OK, thanks! A new mutualism between Chlamydomonas and methylobacteria facilitates growth on amino acids and peptides by Calatrava, Victoria, Hom, Erik F Y, Llamas, Ángel, Fernández, Emilio, Galván, Aurora

“…Nitrogen is a key nutrient for land plants and phytoplankton in terrestrial and aquatic ecosystems. The model alga Chlamydomonas reinhardtii can grow…”
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Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community by Venkataram, Sandeep, Kuo, Huan-Yu, Hom, Erik F. Y., Kryazhimskiy, Sergey

“…Species interactions drive evolution while evolution shapes these interactions. The resulting eco-evolutionary dynamics and their repeatability depend on how…”
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Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism by Chang, Roger L, Ghamsari, Lila, Manichaikul, Ani, Hom, Erik F Y, Balaji, Santhanam, Fu, Weiqi, Shen, Yun, Hao, Tong, Palsson, Bernhard Ø, Salehi‐Ashtiani, Kourosh, Papin, Jason A

“…Metabolic network reconstruction encompasses existing knowledge about an organism's metabolism and genome annotation, providing a platform for omics data…”
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Methodological Approaches Frame Insights into Endophyte Richness and Community Composition by Oita, Shuzo, Carey, Jamison, Kline, Ian, Ibáñez, Alicia, Yang, Nathaniel, Hom, Erik F. Y., Carbone, Ignazio, U’Ren, Jana M., Arnold, A. Elizabeth

“…Isolating microbes is vital to study microbiomes, but insights into microbial diversity and ecology can be constrained by recalcitrant or unculturable strains…”
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Symbiosis and the Anthropocene by Hom, Erik F. Y., Penn, Alexandra S.

“…Recent human activity has profoundly transformed Earth biomes on a scale and at rates that are unprecedented. Given the central role of symbioses in ecosystem…”
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Towards a Systems Biology Approach to Understanding the Lichen Symbiosis: Opportunities and Challenges of Implementing Network Modelling by Nazem-Bokaee, Hadi, Hom, Erik F Y, Warden, Andrew C, Mathews, Sarah, Gueidan, Cécile

“…Lichen associations, a classic model for successful and sustainable interactions between micro-organisms, have been studied for many years. However, there are…”
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The Chlamydomonas genome project: a decade on by Blaby, Ian K., Blaby-Haas, Crysten E., Tourasse, Nicolas, Hom, Erik F.Y., Lopez, David, Aksoy, Munevver, Grossman, Arthur, Umen, James, Dutcher, Susan, Porter, Mary, King, Stephen, Witman, George B., Stanke, Mario, Harris, Elizabeth H., Goodstein, David, Grimwood, Jane, Schmutz, Jeremy, Vallon, Olivier, Merchant, Sabeeha S., Prochnik, Simon

“…•Chlamydomonas is a model algal system with a mature genome project.•Substantial improvements to the genome assembly and gene models have been made.•Diverse…”
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Fluorescence Correlation Spectroscopy Simulations of Photophysical Phenomena and Molecular Interactions:  A Molecular Dynamics/Monte Carlo Approach by Dix, James A, Hom, Erik F. Y, Verkman, A. S

“…Fluorescence correlation spectroscopy (FCS) is being applied increasingly to study diffusion and interactions of fluorescently labeled macromolecules in…”
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A Chemical Perspective on Microalgal–Microbial Interactions by Hom, Erik F.Y., Aiyar, Prasad, Schaeme, Daniel, Mittag, Maria, Sasso, Severin

“…The exchange of chemical compounds is central to the interactions of microalgae with other microorganisms. Although foundational for many food webs, these…”
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Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii by Flowers, Jonathan M., Hazzouri, Khaled M., Pham, Gina M., Rosas, Ulises, Bahmani, Tayebeh, Khraiwesh, Basel, Nelson, David R., Jijakli, Kenan, Abdrabu, Rasha, Harris, Elizabeth H., Lefebvre, Paul A., Hom, Erik F.Y., Salehi-Ashtiani, Kourosh, Purugganan, Michael D.

“…We performed whole-genome resequencing of 12 field isolates and eight commonly studied laboratory strains of the model organism Chlamydomonas reinhardtii to…”
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WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia by Patel-King, Ramila S, Gilberti, Renée M, Hom, Erik F Y, King, Stephen M

“…Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163…”
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The community ecology perspective of omics data by Jurburg, Stephanie D, Buscot, François, Chatzinotas, Antonis, Chaudhari, Narendrakumar M, Clark, Adam T, Garbowski, Magda, Grenié, Matthias, Hom, Erik F Y, Karakoç, Canan, Marr, Susanne, Neumann, Steffen, Tarkka, Mika, van Dam, Nicole M, Weinhold, Alexander, Heintz-Buschart, Anna

“…The measurement of uncharacterized pools of biological molecules through techniques such as metabarcoding, metagenomics, metatranscriptomics, metabolomics, and…”
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AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data by Hom, Erik F Y, Marchis, Franck, Lee, Timothy K, Haase, Sebastian, Agard, David A, Sedat, John W

“…We describe an adaptive image deconvolution algorithm (AIDA) for myopic deconvolution of multi-frame and three-dimensional data acquired through astronomical…”
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A unified taxonomy for ciliary dyneins by Hom, Erik F. Y., Witman, George B., Harris, Elizabeth H., Dutcher, Susan K., Kamiya, Ritsu, Mitchell, David R., Pazour, Gregory J., Porter, Mary E., Sale, Winfield S., Wirschell, Maureen, Yagi, Toshiki, King, Stephen M.

“…The formation and function of eukaryotic cilia/flagella require the action of a large array of dynein microtubule motor complexes. Due to genetic, biochemical,…”
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On the move: sloths and their epibionts as model mobile ecosystems by Kaup, Maya, Trull, Sam, Hom, Erik F. Y.

“…ABSTRACT Sloths are unusual mobile ecosystems, containing a high diversity of epibionts living and growing in their fur as they climb slowly through the…”
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pH and buffering capacity: Fundamental yet underappreciated drivers of algal-bacterial interactions by Calatrava, Victoria, Kilonzo, Noah K, Hom, Erik F Y

“…Understanding microbial interactions in native habitats has been difficult given the complexity of such environments. Using state-of-the-art microfluidics to…”
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