Search Results - "Holm, B."

Cervicovaginal microbiota and local immune response modulate the risk of spontaneous preterm delivery by Elovitz, Michal A., Gajer, Pawel, Riis, Valerie, Brown, Amy G., Humphrys, Michael S., Holm, Johanna B., Ravel, Jacques

“…Failure to predict and understand the causes of preterm birth, the leading cause of neonatal morbidity and mortality, have limited effective interventions and…”
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SpeciateIT and vSpeciateDB: novel, fast, and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota by Holm, Johanna B, Gajer, Pawel, Ravel, Jacques

“…Clustering of sequences into operational taxonomic units (OTUs) and denoising methods are a mainstream stopgap to taxonomically classifying large numbers of…”
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Physiological role of taurine - from organism to organelle by Lambert, I. H., Kristensen, D. M., Holm, J. B., Mortensen, O. H.

“…Taurine is often referred to as a semi‐essential amino acid as newborn mammals have a limited ability to synthesize taurine and have to rely on dietary supply…”
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Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis by Hjorth, Mads F., Blædel, Trine, Bendtsen, Line Q., Lorenzen, Janne K., Holm, Jacob B., Kiilerich, Pia, Roager, Henrik M., Kristiansen, Karsten, Larsen, Lesli H., Astrup, Arne

“…Background/objectives Individuals with high pre-treatment bacterial Prevotella -to- Bacteroides ( P/B ) ratio have been reported to lose more body weight on…”
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VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition by France, Michael T, Ma, Bing, Gajer, Pawel, Brown, Sarah, Humphrys, Michael S, Holm, Johanna B, Waetjen, L Elaine, Brotman, Rebecca M, Ravel, Jacques

“…Taxonomic profiles of vaginal microbial communities can be sorted into a discrete number of categories termed community state types (CSTs). This approach is…”
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A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina by Ma, Bing, France, Michael T., Crabtree, Jonathan, Holm, Johanna B., Humphrys, Michael S., Brotman, Rebecca M., Ravel, Jacques

“…Analysis of metagenomic and metatranscriptomic data is complicated and typically requires extensive computational resources. Leveraging a curated reference…”
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Circulating C-reactive protein levels as a prognostic biomarker in breast cancer across body mass index groups by Holm, J. B., Baggesen, E., Cronin-Fenton, D., Frystyk, J., Bruun, J. M., Christiansen, P., Borgquist, S.

“…Obesity and systemic inflammation are associated with breast cancer (BC) outcomes. Systemic inflammation is increased in obesity. We examined the association…”
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Concerted suppression of all starch branching enzyme genes in barley produces amylose-only starch granules by Carciofi, Massimiliano, Blennow, Andreas, Jensen, Susanne L, Shaik, Shahnoor S, Henriksen, Anette, Buléon, Alain, Holm, Preben B, Hebelstrup, Kim H

“…Starch is stored in higher plants as granules composed of semi-crystalline amylopectin and amorphous amylose. Starch granules provide energy for the plant…”
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Association between Cerebral Performance Category, Modified Rankin Scale, and discharge disposition after cardiac arrest by Rittenberger, Jon C, Raina, Ketki, Holm, Margo B, Kim, Young Joo, Callaway, Clifton W

“…Abstract Background Cerebral Performance Category (CPC), Modified Rankin Scale (mRS) and discharge disposition are commonly used to determine outcomes…”
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IRF8 Transcription-Factor-Dependent Classical Dendritic Cells Are Essential for Intestinal T Cell Homeostasis by Luda, Katarzyna M., Joeris, Thorsten, Persson, Emma K., Rivollier, Aymeric, Demiri, Mimoza, Sitnik, Katarzyna M., Pool, Lieneke, Holm, Jacob B., Melo-Gonzalez, Felipe, Richter, Lisa, Lambrecht, Bart N., Kristiansen, Karsten, Travis, Mark A., Svensson-Frej, Marcus, Kotarsky, Knut, Agace, William W.

“…The role of dendritic cells (DCs) in intestinal immune homeostasis remains incompletely defined. Here we show that mice lacking IRF8…”
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Leaf senescence and nutrient remobilisation in barley and wheat by Gregersen, P. L., Holm, P. B., Krupinska, K.

“…Extensive studies have been undertaken on senescence processes in barley and wheat and their importance for the nitrogen use efficiency of these crop plants…”
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Streptococcus Species Abundance in the Gut Is Linked to Subclinical Coronary Atherosclerosis in 8973 Participants From the SCAPIS Cohort by Sayols-Baixeras, Sergi, Dekkers, Koen F., Baldanzi, Gabriel, Jönsson, Daniel, Hammar, Ulf, Lin, Yi-Ting, Ahmad, Shafqat, Nguyen, Diem, Varotsis, Georgios, Pita, Sara, Nielsen, Nynne, Eklund, Aron C., Holm, Jacob B., Nielsen, H. Bjørn, Ericson, Ulrika, Brunkwall, Louise, Ottosson, Filip, Larsson, Anna, Ericson, Dan, Klinge, Björn, Nilsson, Peter M., Malinovschi, Andrei, Lind, Lars, Bergström, Göran, Sundström, Johan, Ärnlöv, Johan, Engström, Gunnar, Smith, J. Gustav, Orho-Melander, Marju, Fall, Tove

“…Gut microbiota have been implicated in atherosclerotic disease, but their relation with subclinical coronary atherosclerosis is unclear. This study aimed to…”
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Refinement of 16S rRNA gene analysis for low biomass biospecimens by Villette, Remy, Autaa, Gaelle, Hind, Sophie, Holm, Johanna B., Moreno-Sabater, Alicia, Larsen, Martin

“…High-throughput phylogenetic 16S rRNA gene analysis has permitted to thoroughly delve into microbial community complexity and to understand host-microbiota…”
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Liquidity constraints and precautionary saving by Carroll, Christopher D., Holm, Martin B., Kimball, Miles S.

“…We provide the analytical explanation of the interactions between precautionary saving and liquidity constraints. The effects of liquidity constraints and…”
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Thalamic functional connectivity and sensorimotor processing in neurodevelopmental disorders by Karavallil Achuthan, Smitha, Stavrinos, Despina, Argueta, Paula, Vanderburgh, Caroline, Holm, Haley B, Kana, Rajesh K

“…One of the earliest neurobiological findings in autism has been the differences in the thalamocortical pathway connectivity, suggesting the vital role thalamus…”
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Integrating compositional and functional content to describe vaginal microbiomes in health and disease by Holm, Johanna B, France, Michael T, Gajer, Pawel, Ma, Bing, Brotman, Rebecca M, Shardell, Michelle, Forney, Larry, Ravel, Jacques

“…A Lactobacillus-dominated vaginal microbiome provides the first line of defense against adverse genital tract health outcomes. However, there is limited…”
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Neurological and functional status following cardiac arrest: Method and tool utility by Raina, Ketki. D, Callaway, Clifton, Rittenberger, Jon. C, Holm, Margo. B

“…Summary Introduction Assessing the neurological and disability status of cardiac arrest (CA) survivors is important for evaluating the outcomes of…”
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Comparative Metagenome-Assembled Genome Analysis of " Candidatus Lachnocurva vaginae", Formerly Known as Bacterial Vaginosis-Associated Bacterium-1 (BVAB1) by Holm, Johanna B, France, Michael T, Ma, Bing, McComb, Elias, Robinson, Courtney K, Mehta, Aditya, Tallon, Luke J, Brotman, Rebecca M, Ravel, Jacques

“…Bacterial vaginosis-associated bacterium 1 (BVAB1) is an as-yet uncultured bacterial species found in the human vagina that belongs to the family within the…”
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Cognitive and Affective Predictors of Rehabilitation Participation After Stroke by Skidmore, Elizabeth R., PhD, OTR/L, Whyte, Ellen M., MD, Holm, Margo B., PhD, OTR/L, Becker, James T., PhD, Butters, Meryl A., PhD, Dew, Mary Amanda, PhD, Munin, Michael C., MD, Lenze, Eric J., MD

“…Abstract Skidmore ER, Whyte EM, Holm MB, Becker JT, Butters MA, Dew MA, Munin MC, Lenze EJ. Cognitive and affective predictors of rehabilitation participation…”
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Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform by Holm, Johanna B, Humphrys, Michael S, Robinson, Courtney K, Settles, Matthew L, Ott, Sandra, Fu, Li, Yang, Hongqiu, Gajer, Pawel, He, Xin, McComb, Elias, Gravitt, Patti E, Ghanem, Khalil G, Brotman, Rebecca M, Ravel, Jacques

“…Amplification, sequencing, and analysis of the 16S rRNA gene affords characterization of microbial community composition. As this tool has become more popular…”
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