Search Results - "Hoekenga, Owen A."

Weighted Correlation Network Analysis (WGCNA) Applied to the Tomato Fruit Metabolome by DiLeo, Matthew V, Strahan, Gary D, den Bakker, Meghan, Hoekenga, Owen A, Csermely, Peter

“…Advances in “omics” technologies have revolutionized the collection of biological data. A matching revolution in our understanding of biological systems,…”
Get full text

How do crop plants tolerate acid soils? Mechanisms of aluminum tolerance and phosphorous efficiency by Kochian, Leon V, Hoekenga, Owen A, Pineros, Miguel A

“…Acid soils significantly limit crop production worldwide because approximately 50% of the world's potentially arable soils are acidic. Because acid soils are…”
Get full text

Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations by Hu, Haixiao, Campbell, Malachy T., Yeats, Trevor H., Zheng, Xuying, Runcie, Daniel E., Covarrubias-Pazaran, Giovanny, Broeckling, Corey, Yao, Linxing, Caffe-Treml, Melanie, Gutiérrez, Lucı́a, Smith, Kevin P., Tanaka, James, Hoekenga, Owen A., Sorrells, Mark E., Gore, Michael A., Jannink, Jean-Luc

“…Key message Integration of multi-omics data improved prediction accuracies of oat agronomic and seed nutritional traits in multi-environment trials and…”
Get full text

Applying network and genetic analysis to the potato metabolome by Levina, Anna V, Hoekenga, Owen A, Gordin, Mikhail, Broeckling, Corey, De Jong, Walter S

“…Compositional traits in potato [ L.] are economically important but genetically complex, often controlled by many loci of small effect; new methods need to be…”
Get full text

physiology, genetics and molecular biology of plant aluminum resistance and toxicity by Kochian, L.V, Pineros, M.A, Hoekenga, O.A

“…Aluminum (Al) toxicity is the primary factor limiting crop production on acidic soils (pH values of 5 or below), and because 50% of the world's potentially…”
Get full text

The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome by Asaro, Alexandra, Ziegler, Gregory, Ziyomo, Cathrine, Hoekenga, Owen A, Dilkes, Brian P, Baxter, Ivan

“…Plants obtain soil-resident elements that support growth and metabolism from the water-flow facilitated by transpiration and active transport processes. The…”
Get full text

A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum by Magalhaes, Jurandir V, Kochian, Leon V, Liu, Jiping, Guimarães, Claudia T, Lana, Ubiraci G P, Alves, Vera M C, Wang, Yi-Hong, Schaffert, Robert E, Hoekenga, Owen A, Piñeros, Miguel A, Shaff, Jon E, Klein, Patricia E, Carneiro, Newton P, Coelho, Cintia M, Trick, Harold N

“…Crop yields are significantly reduced by aluminum toxicity on highly acidic soils, which comprise up to 50% of the world's arable land. Candidate aluminum…”
Get full text

Association and Linkage Analysis of Aluminum Tolerance Genes in Maize by Krill, Allison M, Kirst, Matias, Kochian, Leon V, Buckler, Edward S, Hoekenga, Owen A

“…Background: Aluminum (Al) toxicity is a major worldwide constraint to crop productivity on acidic soils. Al becomes soluble at low pH, inhibiting root growth…”
Get full text

Single-Kernel Ionomic Profiles Are Highly Heritable Indicators of Genetic and Environmental Influences on Elemental Accumulation in Maize Grain (Zea mays) by Baxter, Ivan R, Ziegler, Gregory, Lahner, Brett, Mickelbart, Michael V, Foley, Rachel, Danku, John, Armstrong, Paul, Salt, David E, Hoekenga, Owen A, Zhang, Xianlong

“…The ionome, or elemental profile, of a maize kernel can be viewed in at least two distinct ways. First, the collection of elements within the kernel are food…”
Get full text

Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in Arabidopsis thaliana by Nakano, Yuki, Kusunoki, Kazutaka, Hoekenga, Owen A, Tanaka, Keisuke, Iuchi, Satoshi, Sakata, Yoichi, Kobayashi, Masatomo, Yamamoto, Yoshiharu Y, Koyama, Hiroyuki, Kobayashi, Yuriko

“…Under acid soil conditions, Al stress and proton stress can occur, reducing root growth and function. However, these stressors are distinct, and tolerance to…”
Get full text

AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis by Hoekenga, O.A, Maron, L.G, Pineros, M.A, Cançado, G.M.A, Shaff, J, Kobayashi, Y, Ryan, P.R, Dong, B, Delhaize, E, Sasaki, T

“…Aluminum (Al) tolerance in Arabidopsis is a genetically complex trait, yet it is mediated by a single physiological mechanism based on Al-activated root malate…”
Get full text

Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat ( Avena sativa L.) by Carlson, Maryn O, Montilla-Bascon, Gracia, Hoekenga, Owen A, Tinker, Nicholas A, Poland, Jesse, Baseggio, Matheus, Sorrells, Mark E, Jannink, Jean-Luc, Gore, Michael A, Yeats, Trevor H

“…Oat ( L.) has a high concentration of oils, comprised primarily of healthful unsaturated oleic and linoleic fatty acids. To accelerate oat plant breeding…”
Get full text

Characterization of AtALMT1 Expression in Aluminum-Inducible Malate Release and Its Role for Rhizotoxic Stress Tolerance in Arabidopsis by Kobayashi, Yuriko, Hoekenga, Owen A., Itoh, Hirotaka, Nakashima, Midori, Saito, Shoichiro, Shaff, Jon E., Maron, Lyza G., Piñeros, Miguel A., Kochian, Leon V., Koyama, Hiroyuki

“…Malate transporters play a critical role in aluminum (Al) tolerance responses for some plant species, such as Arabidopsis (Arabidopsis thaliana). Here, we…”
Get full text

Genetic and Physiological Analysis of Iron Biofortification in Maize Kernels by Lung'aho, Mercy G, Mwaniki, Angela M, Szalma, Stephen J, Hart, Jonathan J, Rutzke, Michael A, Kochian, Leon V, Glahn, Raymond P, Hoekenga, Owen A, Newbigin, Edward

“…Maize is a major cereal crop widely consumed in developing countries, which have a high prevalence of iron (Fe) deficiency anemia. The major cause of Fe…”
Get full text

High bioavailablilty iron maize (Zea mays L.) developed through molecular breeding provides more absorbable iron in vitro (Caco-2 model) and in vivo (Gallus gallus ) by Tako, Elad, Hoekenga, Owen A, Kochian, Leon V, Glahn, Raymond P

“…Doc number: 3 Abstract Background: Iron (Fe) deficiency is the most common micronutrient deficiency worldwide. Iron biofortification is a preventative strategy…”
Get full text

Leveraging non-targeted metabolite profiling via statistical genomics by Shen, Miaoqing, Broeckling, Corey D, Chu, Elly Yiyi, Ziegler, Gregory, Baxter, Ivan R, Prenni, Jessica E, Hoekenga, Owen A

“…One of the challenges of systems biology is to integrate multiple sources of data in order to build a cohesive view of the system of study. Here we describe…”
Get full text

Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait by Hoekenga, O.A, Vision, T.J, Shaff, J.E, Monforte, A.J, Lee, G.P, Howell, S.H, Kochian, L.V

“…Aluminum (Al) toxicity, which is caused by the solubilization of Al3+ in acid soils resulting in inhibition of root growth and nutrient/water acquisition, is a…”
Get full text

A method for cellular localization of gene expression via quantitative in situ hybridization in plants by Küpper, Hendrik, Seib, Laura Ort, Sivaguru, Mayandi, Hoekenga, Owen A., Kochian, Leon V.

“…Summary A quantitative in situ hybridization technique (quantitative whole‐mount in situ hybridization, QISH) for plants is described. It employs direct…”
Get full text

Joint genetic and network analyses identify loci associated with root growth under NaCl stress in Arabidopsis thaliana by Kobayashi, Yuriko, Sadhukhan, Ayan, Tazib, Tanveer, Nakano, Yuki, Kusunoki, Kazutaka, Kamara, Mohamed, Chaffai, Radhouane, Iuchi, Satoshi, Sahoo, Lingaraj, Kobayashi, Masatomo, Hoekenga, Owen A., Koyama, Hiroyuki

“…Plants have evolved a series of tolerance mechanisms to saline stress, which perturbs physiological processes throughout the plant. To identify genetic…”
Get full text

Mechanisms of metal resistance in plants: aluminum and heavy metals by Kochian, Leon V., Pence, Nicole S., Letham, Deborah L.D., Pineros, Miguel A., Magalhaes, Jurandir V., Hoekenga, Owen A., Garvin, David F.

“…Plants have evolved sophisticated mechanisms to deal with toxic levels of metals in the soil. In this paper, an overview of recent progress with regards to…”
Get full text