Search Results - "Hodkinson, Brendan"

The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera by Lücking, Robert, Hodkinson, Brendan P, Leavitt, Steven D

“…Ninety years after Zahlbruckner, we present the most recent update to the classification of lichen fungi in the Ascomycota and Basidiomycota to genus level,…”
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Skin Microbiome Surveys Are Strongly Influenced by Experimental Design by Meisel, Jacquelyn S., Hannigan, Geoffrey D., Tyldsley, Amanda S., SanMiguel, Adam J., Hodkinson, Brendan P., Zheng, Qi, Grice, Elizabeth A.

“…Culture-independent studies to characterize skin microbiota are increasingly common, due in part to affordable and accessible sequencing and analysis…”
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Redefining the Chronic-Wound Microbiome: Fungal Communities Are Prevalent, Dynamic, and Associated with Delayed Healing by Kalan, Lindsay, Loesche, Michael, Hodkinson, Brendan P, Heilmann, Kristopher, Ruthel, Gordon, Gardner, Sue E, Grice, Elizabeth A

“…Chronic nonhealing wounds have been heralded as a silent epidemic, causing significant morbidity and mortality especially in elderly, diabetic, and obese…”
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Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants by Bonito, Gregory, Reynolds, Hannah, Robeson, Michael S., II, Nelson, Jessica, Hodkinson, Brendan P, Tuskan, Gerald, Schadt, Christopher W, Vilgalys, Rytas

“…Microbial communities in plant roots provide critical links between above‐ and belowground processes in terrestrial ecosystems. Variation in root communities…”
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Temporal Stability in Chronic Wound Microbiota Is Associated With Poor Healing by Loesche, Michael, Gardner, Sue E., Kalan, Lindsay, Horwinski, Joseph, Zheng, Qi, Hodkinson, Brendan P., Tyldsley, Amanda S., Franciscus, Carrie L., Hillis, Stephen L., Mehta, Samir, Margolis, David J., Grice, Elizabeth A.

“…Microbial burden of chronic wounds is believed to play an important role in impaired healing and the development of infection-related complications. However,…”
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The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome by Hannigan, Geoffrey D, Meisel, Jacquelyn S, Tyldsley, Amanda S, Zheng, Qi, Hodkinson, Brendan P, SanMiguel, Adam J, Minot, Samuel, Bushman, Frederic D, Grice, Elizabeth A

“…Viruses make up a major component of the human microbiota but are poorly understood in the skin, our primary barrier to the external environment. Viral…”
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Commensal microbiota modulate gene expression in the skin by Meisel, Jacquelyn S, Sfyroera, Georgia, Bartow-McKenney, Casey, Gimblet, Ciara, Bugayev, Julia, Horwinski, Joseph, Kim, Brian, Brestoff, Jonathan R, Tyldsley, Amanda S, Zheng, Qi, Hodkinson, Brendan P, Artis, David, Grice, Elizabeth A

“…The skin harbors complex communities of resident microorganisms, yet little is known of their physiological roles and the molecular mechanisms that mediate…”
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microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales by Hodkinson, Brendan P, Lutzoni, Francois

“…This study uses a set of PCR-based methods to examine the putative microbiota associated with lichen thalli. In initial experiments, generalized…”
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Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome by Hodkinson, Brendan P., Gottel, Neil R., Schadt, Christopher W., Lutzoni, François

“…Summary Although common knowledge dictates that the lichen thallus is formed solely by a fungus (mycobiont) that develops a symbiotic relationship with an alga…”
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A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families by Miadlikowska, Jolanta, Kauff, Frank, Högnabba, Filip, Oliver, Jeffrey C., Molnár, Katalin, Fraker, Emily, Gaya, Ester, Hafellner, Josef, Hofstetter, Valérie, Gueidan, Cécile, Otálora, Mónica A.G., Hodkinson, Brendan, Kukwa, Martin, Lücking, Robert, Björk, Curtis, Sipman, Harrie J.M., Burgaz, Ana Rosa, Thell, Arne, Passo, Alfredo, Myllys, Leena, Goward, Trevor, Fernández-Brime, Samantha, Hestmark, Geir, Lendemer, James, Lumbsch, H. Thorsten, Schmull, Michaela, Schoch, Conrad L., Sérusiaux, Emmanuël, Maddison, David R., Arnold, A. Elizabeth, Lutzoni, François, Stenroos, Soili

“…[Display omitted] •Large-scale molecular phylogenetic synthesis of the third largest class of fungi.•Based on a cumulative supermatrix approach of >1100…”
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Corrections and amendments to the 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota by Lücking, Robert, Hodkinson, Brendan P, Leavitt, Steven D

“…The following corrections and amendments are made to the 2016 classification of lichenized fungi published in the previous issue of this journal. Four families…”
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A radical shift in the taxonomy of Lepraria s.l.: Molecular and morphological studies shed new light on the evolution of asexuality and lichen growth form diversification by Lendemer, James C., Hodkinson, Brendan P.

“…A combination of molecular phylogenetic analyses of ITS and mtSSU sequences, morphological and chemical analyses were used to investigate the lineages…”
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Safety and activity of ibrutinib in combination with nivolumab in patients with relapsed non-Hodgkin lymphoma or chronic lymphocytic leukaemia: a phase 1/2a study by Younes, Anas, Brody, Joshua, Carpio, Cecilia, Lopez-Guillermo, Armando, Ben-Yehuda, Dina, Ferhanoglu, Burhan, Nagler, Arnon, Ozcan, Muhit, Avivi, Irit, Bosch, Francesc, Caballero Barrigón, Maria Dolores, Hellmann, Andrzej, Kuss, Bryone, Ma, David D F, Demirkan, Fatih, Yağci, Münci, Horowitz, Netanel A, Marlton, Paula, Cordoba, Raul, Wrobel, Tomasz, Buglio, Daniela, Streit, Michael, Hodkinson, Brendan P, Schaffer, Michael, Alvarez, John, Ceulemans, Rob, Balasubramanian, Sriram, de Jong, Jan, Wang, Shean-Sheng, Fourneau, Nele, Jurczak, Wojciech

“…Preclinical studies have shown synergistic antitumour effects between ibrutinib and immune-checkpoint blockade. The aim of this study was to assess the safety…”
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The shared microbiota of humans and companion animals as evaluated from Staphylococcus carriage sites by Misic, Ana M, Davis, Meghan F, Tyldsley, Amanda S, Hodkinson, Brendan P, Tolomeo, Pam, Hu, Baofeng, Nachamkin, Irving, Lautenbach, Ebbing, Morris, Daniel O, Grice, Elizabeth A

“…Staphylococcus aureus and other coagulase-positive staphylococci (CPS) colonize skin and mucous membrane sites and can cause skin and soft tissue infections…”
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Lepidostromatales, a new order of lichenized fungi (Basidiomycota, Agaricomycetes), with two new genera, Ertzia and Sulzbacheromyces, and one new species, Lepidostroma winklerianum by Hodkinson, Brendan P., Moncada, Bibiana, Lücking, Robert

“…We present a revised molecular phylogeny of higher Basidiomycota focusing on Lepidostromataceae based on the large subunit (28S) of the nuclear ribosomal rDNA…”
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Phylogenetic diversity of two geographically overlapping lichens: isolation by distance, environment, or fragmentation? by Moncada, Bibiana, Mercado‐Díaz, Joel A., Magain, Nicolas, Hodkinson, Brendan P., Smith, Clifford W., Bungartz, Frank, Pérez‐Pérez, Rosa‐Emilia, Gumboski, Emerson, Sérusiaux, Emmanuël, Lumbsch, H. Thorsten, Lücking, Robert

“…Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate…”
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Biomarkers of response to ibrutinib plus nivolumab in relapsed diffuse large B-cell lymphoma, follicular lymphoma, or Richter's transformation by Hodkinson, Brendan P., Schaffer, Michael, Brody, Joshua D., Jurczak, Wojciech, Carpio, Cecilia, Ben-Yehuda, Dina, Avivi, Irit, Forslund, Ann, Özcan, Muhit, Alvarez, John, Ceulemans, Rob, Fourneau, Nele, Younes, Anas, Balasubramanian, Sriram

“…•Biomarkers of response to ibrutinib + nivolumab were analyzed in diffuse large B-cell lymphoma (DLBCL), follicular lymphoma and Richter transformation.•DLBCL…”
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Culture-independent pilot study of microbiota colonizing open fractures and association with severity, mechanism, location, and complication from presentation to early outpatient follow-up by Hannigan, Geoffrey D., Hodkinson, Brendan P., McGinnis, Kelly, Tyldsley, Amanda S., Anari, Jason B., Horan, Annamarie D., Grice, Elizabeth A., Mehta, Samir

“…ABSTRACT Precise identification of bacteria associated with post‐injury infection, co‐morbidities, and outcomes could have a tremendous impact in the…”
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PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination by Lücking, Robert, Hodkinson, Brendan P, Stamatakis, Alexandros, Cartwright, Reed A

“…We present a novel method to encode ambiguously aligned regions in fixed multiple sequence alignments by 'Pairwise Identity and Cost Scores Ordination'…”
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Phylogenetic affiliations of members of the heterogeneous lichen-forming fungi of the genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota) by Schmull, Michaela, Miadlikowska, Jolanta, Pelzer, Monika, Stocker-Wörgötter, Elfie, Hofstetter, Valerie, Fraker, Emily, Hodkinson, Brendan P., Reeb, Valerie, Kukwa, Martin, Lumbsch, H. Thorsten, Kauff, Frank, Lutzoni, François

“…The genus Lecidea Ach. sensu lato (sensu Zahlbruckner) includes almost 1200 species, out of which only 100 species represent Lecidea sensu stricto (sensu…”
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