Search Results - "Hoad, Gemma"

PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data by Peabody, Michael A, Lau, Wing Yin Venus, Hoad, Gemma R, Jia, Baofeng, Maguire, Finlay, Gray, Kristen L, Beiko, Robert G, Brinkman, Fiona S L

“…Abstract Motivation Many methods for microbial protein subcellular localization (SCL) prediction exist; however, none is readily available for analysis of…”
Get full text

PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations by Lau, Wing Yin Venus, Hoad, Gemma R, Jin, Vivian, Winsor, Geoffrey L, Madyan, Ashmeet, Gray, Kristen L, Laird, Matthew R, Lo, Raymond, Brinkman, Fiona S L

“…Abstract Protein subcellular localization (SCL) is important for understanding protein function, genome annotation, and aids identification of potential cell…”
Get full text

Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks by Bertelli, Claire, Gray, Kristen L, Woods, Nolan, Lim, Adrian C, Tilley, Keith E, Winsor, Geoffrey L, Hoad, Gemma R, Roudgar, Ata, Spencer, Adam, Peltier, James, Warren, Derek, Raphenya, Amogelang R, McArthur, Andrew G, Brinkman, Fiona S L

“…Outbreaks of virulent and/or drug-resistant bacteria have a significant impact on human health and major economic consequences. Genomic islands (GIs; defined…”
Get full text

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets by Bertelli, Claire, Laird, Matthew R, Williams, Kelly P, Lau, Britney Y, Hoad, Gemma, Winsor, Geoffrey L, Brinkman, Fiona S L

“…IslandViewer (http://www.pathogenomics.sfu.ca/islandviewer/) is a widely-used webserver for the prediction and interactive visualization of genomic islands…”
Get full text

European Nucleotide Archive by Leinonen, Rasko, Akhtar, Ruth, Birney, Ewan, Bower, Lawrence, Cerdeno-Tárraga, Ana, Cheng, Ying, Cleland, Iain, Faruque, Nadeem, Goodgame, Neil, Gibson, Richard, Hoad, Gemma, Jang, Mikyung, Pakseresht, Nima, Plaister, Sheila, Radhakrishnan, Rajesh, Reddy, Kethi, Sobhany, Siamak, Ten Hoopen, Petra, Vaughan, Robert, Zalunin, Vadim, Cochrane, Guy

“…The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is Europe's primary nucleotide-sequence repository. The ENA consists of three main databases:…”
Get full text

EMBL Nucleotide Sequence Database in 2006 by Kulikova, Tamara, Akhtar, Ruth, Aldebert, Philippe, Althorpe, Nicola, Andersson, Mikael, Baldwin, Alastair, Bates, Kirsty, Bhattacharyya, Sumit, Bower, Lawrence, Browne, Paul, Castro, Matias, Cochrane, Guy, Duggan, Karyn, Eberhardt, Ruth, Faruque, Nadeem, Hoad, Gemma

“…The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl) at the EMBL European Bioinformatics Institute, UK, offers a large and freely accessible…”
Get full text

Petabyte-scale innovations at the European Nucleotide Archive by Cochrane, Guy, Akhtar, Ruth, Bonfield, James, Bower, Lawrence, Demiralp, Fehmi, Faruque, Nadeem, Gibson, Richard, Hoad, Gemma, Hubbard, Tim, Hunter, Christopher, Jang, Mikyung, Juhos, Szilveszter, Leinonen, Rasko, Leonard, Steven, Lin, Quan, Lopez, Rodrigo, Lorenc, Dariusz, McWilliam, Hamish, Mukherjee, Gaurab, Plaister, Sheila, Radhakrishnan, Rajesh, Robinson, Stephen, Sobhany, Siamak, Hoopen, Petra Ten, Vaughan, Robert, Zalunin, Vadim, Birney, Ewan

“…Dramatic increases in the throughput of nucleotide sequencing machines, and the promise of ever greater performance, have thrust bioinformatics into the era of…”
Get full text

Improvements to services at the European Nucleotide Archive by Leinonen, Rasko, Akhtar, Ruth, Birney, Ewan, Bonfield, James, Bower, Lawrence, Corbett, Matt, Cheng, Ying, Demiralp, Fehmi, Faruque, Nadeem, Goodgame, Neil, Gibson, Richard, Hoad, Gemma, Hunter, Christopher, Jang, Mikyung, Leonard, Steven, Lin, Quan, Lopez, Rodrigo, Maguire, Michael, McWilliam, Hamish, Plaister, Sheila, Radhakrishnan, Rajesh, Sobhany, Siamak, Slater, Guy, Ten Hoopen, Petra, Valentin, Franck, Vaughan, Robert, Zalunin, Vadim, Zerbino, Daniel, Cochrane, Guy

“…The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is Europe's primary nucleotide sequence archival resource, safeguarding open nucleotide data…”
Get full text

EMBL Nucleotide Sequence Database in 2006 by Kulikova, Tamara, Akhtar, Ruth, Aldebert, Philippe, Althorpe, Nicola, Andersson, Mikael, Baldwin, Alastair, Bates, Kirsty, Bhattacharyya, Sumit, Bower, Lawrence, Browne, Paul, Castro, Matias, Cochrane, Guy, Duggan, Karyn, Eberhardt, Ruth, Faruque, Nadeem, Hoad, Gemma, Kanz, Carola, Lee, Charles, Leinonen, Rasko, Lin, Quan, Lombard, Vincent, Lopez, Rodrigo, Lorenc, Dariusz, McWilliam, Hamish, Mukherjee, Gaurab, Nardone, Francesco, Pastor, Maria Pilar Garcia, Plaister, Sheila, Sobhany, Siamak, Stoehr, Peter, Vaughan, Robert, Wu, Dan, Zhu, Weimin, Apweiler, Rolf

“…The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl) at the EMBL European Bioinformatics Institute, UK, offers a large and freely accessible…”
Get full text

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database by Cochrane, Guy, Akhtar, Ruth, Aldebert, Philippe, Althorpe, Nicola, Baldwin, Alastair, Bates, Kirsty, Bhattacharyya, Sumit, Bonfield, James, Bower, Lawrence, Browne, Paul, Castro, Matias, Cox, Tony, Demiralp, Fehmi, Eberhardt, Ruth, Faruque, Nadeem, Hoad, Gemma, Jang, Mikyung, Kulikova, Tamara, Labarga, Alberto, Leinonen, Rasko, Leonard, Steven, Lin, Quan, Lopez, Rodrigo, Lorenc, Dariusz, McWilliam, Hamish, Mukherjee, Gaurab, Nardone, Francesco, Plaister, Sheila, Robinson, Stephen, Sobhany, Siamak, Vaughan, Robert, Wu, Dan, Zhu, Weimin, Apweiler, Rolf, Hubbard, Tim, Birney, Ewan

“…The Ensembl Trace Archive (http://trace.ensembl.org/) and the EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl/), known together as the European…”
Get full text