Search Results - "Hess, Jon E."

Comparison of FST outlier tests for SNP loci under selection by NARUM, SHAWN R, HESS, JON E

“…Genome scans with many genetic markers provide the opportunity to investigate local adaptation in natural populations and identify candidate genes under…”
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Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead by Micheletti, Steven J, Hess, Jon E, Zendt, Joseph S, Narum, Shawn R

“…Disparity in the timing of biological events occurs across a variety of systems, yet the understanding of genetic basis underlying diverse phenologies remains…”
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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species by Hess, Jon E., Campbell, Nathan R., Close, David A., Docker, Margaret F., Narum, Shawn R.

“…Unlike most anadromous fishes that have evolved strict homing behaviour, Pacific lamprey (Entosphenus tridentatus) seem to lack philopatry as evidenced by…”
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Genomic islands of divergence infer a phenotypic landscape in Pacific lamprey by Hess, Jon E., Smith, Jeramiah J., Timoshevskaya, Nataliya, Baker, Cyndi, Caudill, Christopher C., Graves, David, Keefer, Matthew L., Kinziger, Andrew P., Moser, Mary L., Porter, Laurie L., Silver, Greg, Whitlock, Steven L., Narum, Shawn R.

“…High rates of dispersal can breakdown coadapted gene complexes. However, concentrated genomic architecture (i.e., genomic islands of divergence) can suppress…”
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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes by Timoshevskaya, Nataliya, Eşkut, Kaan İ., Timoshevskiy, Vladimir A., Robb, Sofia M.C., Holt, Carson, Hess, Jon E., Parker, Hugo J., Baker, Cindy F., Miller, Allison K., Saraceno, Cody, Yandell, Mark, Krumlauf, Robb, Narum, Shawn R., Lampman, Ralph T., Gemmell, Neil J., Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer R., Formenti, Giulio, Pelan, Sarah, Sims, Ying, Howe, Kerstin, Fedrigo, Olivier, Jarvis, Erich D., Smith, Jeramiah J.

“…Programmed DNA loss is a gene silencing mechanism that is employed by several vertebrate and nonvertebrate lineages, including all living jawless vertebrates…”
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Efficient population representation with more genetic markers increases performance of a steelhead (Oncorhynchus mykiss) genetic stock identification baseline by Hargrove, John S., Delomas, Thomas A., Powell, John H., Hess, Jon E., Narum, Shawn R., Campbell, Matthew R.

“…Genetic stock identification (GSI) is an important fisheries management tool to identify the origin of fish harvested in mixed stock fisheries. Periodic…”
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Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey by Hess, Jon E., Campbell, Nathan R., Docker, Margaret F., Baker, Cyndi, Jackson, Aaron, Lampman, Ralph, McIlraith, Brian, Moser, Mary L., Statler, David P., Young, William P., Wildbill, Andrew J., Narum, Shawn R.

“…Next‐generation sequencing data can be mined for highly informative single nucleotide polymorphisms (SNPs) to develop high‐throughput genomic assays for…”
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Steelhead (Oncorhynchus mykiss) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions by Willis, Stuart C., Hess, Jon E., Fryer, Jeff K., Whiteaker, John M., Brun, Chris, Gerstenberger, Ryan, Narum, Shawn R.

“…As life history diversity plays a critical role in supporting the resilience of exploited populations, understanding the genetic basis of those life history…”
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Deep ancestry of programmed genome rearrangement in lampreys by Timoshevskiy, Vladimir A., Lampman, Ralph T., Hess, Jon E., Porter, Laurie L., Smith, Jeramiah J.

“…In most multicellular organisms, the structure and content of the genome is rigorously maintained over the course of development. However some species have…”
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Visual and genetic stock identification of a test fishery to forecast Columbia River spring Chinook salmon stocks 2 weeks into the future by Hess, Jon E., Deacy, Bethany M., Rub, Michelle W., Van Doornik, Donald M., Whiteaker, John M., Fryer, Jeffrey K., Narum, Shawn R.

“…Modern fisheries management strives to balance opposing goals of protection for weak stocks and opportunity for harvesting healthy stocks. Test fisheries can…”
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Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon by Willis, Stuart C., Hess, Jon E., Fryer, Jeff K., Whiteaker, John M., Narum, Shawn R.

“…Conserving life‐history variation is a stated goal of many management programs, but the most effective means by which to accomplish this are often far from…”
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Conservation Challenges and Research Needs for Pacific Lamprey in the Columbia River Basin by Clemens, Benjamin J., Beamish, Richard J., Coates, Kelly C., Docker, Margaret F., Dunham, Jason B., Gray, Ann E., Hess, Jon E., Jolley, Jeffrey C., Lampman, Ralph T., McIlraith, Brian J., Moser, Mary L., Murauskas, Joshua G., Noakes, David L. G., Schaller, Howard A., Schreck, Carl B., Starcevich, Steven J., Streif, Bianca, Wetering, Stan J., Wade, Joy, Weitkamp, Laurie A., Wyss, Lance A.

“…The Pacific Lamprey Entosphenus tridentatus, an anadromous fish native to the northern Pacific Ocean and bordering freshwater habitats, has recently…”
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Genes predict long distance migration and large body size in a migratory fish, Pacific lamprey by Hess, Jon E., Caudill, Christopher C., Keefer, Matthew L., McIlraith, Brian J., Moser, Mary L., Narum, Shawn R.

“…Elucidation of genetic mechanisms underpinning migratory behavior could help predict how changes in genetic diversity may affect future spatiotemporal…”
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Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing by Hess, Jon E., Zendt, Joseph S., Matala, Amanda R., Narum, Shawn R.

“…Migration traits are presumed to be complex and to involve interaction among multiple genes. We used both univariate analyses and a multivariate random forest…”
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Comparative phylogeography of a bathymetrically segregated pair of sister taxa of rockfishes (genus Sebastes): black rockfish, Sebastes melanops, and yellowtail rockfish, Sebastes flavidus by Hess, Jon E., Hyde, John R., Moran, Paul

“…Twelve pairs of sister taxa in the speciose rockfish genus, Sebastes , overlap coastal distributions but are bathymetrically segregated. These pairs are ideal…”
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The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution by Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

“…The sea lamprey ( Petromyzon marinus ) serves as a comparative model for reconstructing vertebrate evolution. To enable more informed analyses, we developed a…”
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Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range by Hecht, Benjamin C, Matala, Andrew P, Hess, Jon E, Narum, Shawn R

“…Landscape genomics is a rapidly growing field with recent advances in both genotyping efficiency and statistical analyses that provide insight towards local…”
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Evidence for the genetic basis and epistatic interactions underlying ocean‐ and river‐maturing ecotypes of Pacific Lamprey (Entosphenus tridentatus) returning to the Klamath River, California by Parker, Keith A., Hess, Jon E., Narum, Shawn R., Kinziger, Andrew P.

“…Surveys of genomic variation have improved our understanding of the relationship between fitness‐related phenotypes and their underlying genetic basis. In some…”
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Monitoring Stock‐Specific Abundance, Run Timing, and Straying of Chinook Salmon in the Columbia River Using Genetic Stock Identification (GSI) by Hess, Jon E., Whiteaker, John M., Fryer, Jeffrey K., Narum, Shawn R.

“…Genetic stock identification (GSI) provides a method of characterizing stock‐specific abundance, run timing, and straying as they pertain to the population…”
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Testing for delayed mortality effects in the early marine life history of Columbia River Basin yearling Chinook salmon by Rechisky, Erin L, Welch, David W, Porter, Aswea D, Hess, Jon E, Narum, Shawn R

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