Search Results - "Hermansen, Russell A."

Extracting functional trends from whole genome duplication events using comparative genomics by Hermansen, Russell A, Hvidsten, Torgeir R, Sandve, Simen Rød, Liberles, David A

“…The number of species with completed genomes, including those with evidence for recent whole genome duplication events has exploded. The recently sequenced…”
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De novo genome assembly of the fungal plant pathogen Pyrenophora semeniperda by Soliai, Marcus M, Meyer, Susan E, Udall, Joshua A, Elzinga, David E, Hermansen, Russell A, Bodily, Paul M, Hart, Aaron A, Coleman, Craig E

“…Pyrenophora semeniperda (anamorph Drechslera campulata) is a necrotrophic fungal seed pathogen that has a wide host range within the Poaceae. One of its hosts…”
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Molecular traces of alternative social organization in a termite genome by Terrapon, Nicolas, Li, Cai, Robertson, Hugh M., Ji, Lu, Meng, Xuehong, Booth, Warren, Chen, Zhensheng, Childers, Christopher P., Glastad, Karl M., Gokhale, Kaustubh, Gowin, Johannes, Gronenberg, Wulfila, Hermansen, Russell A., Hu, Haofu, Hunt, Brendan G., Huylmans, Ann Kathrin, Khalil, Sayed M. S., Mitchell, Robert D., Munoz-Torres, Monica C., Mustard, Julie A., Pan, Hailin, Reese, Justin T., Scharf, Michael E., Sun, Fengming, Vogel, Heiko, Xiao, Jin, Yang, Wei, Yang, Zhikai, Yang, Zuoquan, Zhou, Jiajian, Zhu, Jiwei, Brent, Colin S., Elsik, Christine G., Goodisman, Michael A. D., Liberles, David A., Roe, R. Michael, Vargo, Edward L., Vilcinskas, Andreas, Wang, Jun, Bornberg-Bauer, Erich, Korb, Judith, Zhang, Guojie, Liebig, Jürgen

“…Although eusociality evolved independently within several orders of insects, research into the molecular underpinnings of the transition towards social…”
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The salmonid myostatin gene family: a novel model for investigating mechanisms that influence duplicate gene fate by Lawson, Casey B, Niino, Takumu, Hermansen, Russell A, Brok-Volchanskaya, Vera, Jackson, Melissa F, Garikipati, Dilip K, Liberles, David A, Rodgers, Buel D

“…Most fishes possess two paralogs for myostatin, a muscle growth inhibitor, while salmonids are presumed to have four: mstn1a, mstn1b, mstn2a and mstn2b, a…”
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Flux Control in Glycolysis Varies Across the Tree of Life by Orlenko, Alena, Hermansen, Russell A., Liberles, David A.

“…Biochemical thought posits that rate-limiting steps (defined here as points of flux control) are strongly selected as points of pathway regulation and control…”
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Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics by Bybee, Seth M, Bracken-Grissom, Heather, Haynes, Benjamin D, Hermansen, Russell A, Byers, Robert L, Clement, Mark J, Udall, Joshua A, Wilcox, Edward R, Crandall, Keith A

“…Next-gen sequencing technologies have revolutionized data collection in genetic studies and advanced genome biology to novel frontiers. However, to date,…”
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Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast by Hermansen, Russell A, Mannakee, Brian K, Knecht, Wolfgang, Liberles, David A, Gutenkunst, Ryan N

“…Selection on proteins is typically measured with the assumption that each protein acts independently. However, selection more likely acts at higher levels of…”
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The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates by Hermansen, Russell A., Oswald, Benjamin P., Knight, Stormy, Shank, Stephen D., Northover, David, Korunes, Katharine L., Michel, Stephen N., Liberles, David A.

“…With the large collections of gene and genome sequences, there is a need to generate curated comparative genomic databases that enable interpretation of…”
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Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics by Bybee, Seth M., Bracken-Grissom, Heather, Haynes, Benjamin D., Hermansen, Russell A., Byers, Robert L., Clement, Mark J., Udall, Joshua A., Wilcox, Edward R., Crandall, Keith A.

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Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea) by Bybee, Seth M., Bracken-Grissom, Heather D., Hermansen, Russell A., Clement, Mark J., Crandall, Keith A., Felder, Darryl L.

“…We propose a method using next generation sequencing technology for phylogenetics. The method is PCR based, requires little training beyond basic lab skills…”
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The Atlantic salmon genome provides insights into rediploidization by Lien, Sigbjørn, Koop, Ben F., Sandve, Simen R., Miller, Jason R., Kent, Matthew P., Nome, Torfinn, Hvidsten, Torgeir R., Leong, Jong S., Minkley, David R., Zimin, Aleksey, Grammes, Fabian, Grove, Harald, Gjuvsland, Arne, Walenz, Brian, Hermansen, Russell A., von Schalburg, Kris, Rondeau, Eric B., Di Genova, Alex, Samy, Jeevan K. A., Olav Vik, Jon, Vigeland, Magnus D., Caler, Lis, Grimholt, Unni, Jentoft, Sissel, Inge Våge, Dag, de Jong, Pieter, Moen, Thomas, Baranski, Matthew, Palti, Yniv, Smith, Douglas R., Yorke, James A., Nederbragt, Alexander J., Tooming-Klunderud, Ave, Jakobsen, Kjetill S., Jiang, Xuanting, Fan, Dingding, Hu, Yan, Liberles, David A., Vidal, Rodrigo, Iturra, Patricia, Jones, Steven J. M., Jonassen, Inge, Maass, Alejandro, Omholt, Stig W., Davidson, William S.

“…The whole-genome duplication 80 million years ago of the common ancestor of salmonids (salmonid-specific fourth vertebrate whole-genome duplication, Ss4R)…”
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novo Genome Assembly of the Fungal Plant Pathogen Pyrenophora semeniperda by Soliai, Marcus M, Meyer, Susan E, Udall, Joshua A, Elzinga, David E, Hermansen, Russell A, Bodily, Paul M, Hart, Aaron A, Coleman, Craig E, Fisher, Matthew (Mat) Charles

“…Pyrenophora semeniperda (anamorph Drechslera campulata) is a necrotrophic fungal seed pathogen that has a wide host range within the Poaceae. One of its hosts…”
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Examining the processes of protein evolution in a lineage specific context in genomes by Hermansen, Russell A

“…Understanding how genotypic changes impact the phenotype of an organism is a primary goal in molecular evolution. A primary means to discovering genes that…”
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De novo Genome Assembly of the Fungal Plant Pathogen Pyrenophora semeniperda: e87045 by Soliai, Marcus M, Meyer, Susan E, Udall, Joshua A, Elzinga, David E, Hermansen, Russell A, Bodily, Paul M, Hart, Aaron A, Coleman, Craig E

“…Pyrenophora semeniperda (anamorph Drechslera campulata) is a necrotrophic fungal seed pathogen that has a wide host range within the Poaceae. One of its hosts…”
Get full text