Search Results - "Herbordt, Martin C"

Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks by Sanaullah, Ahmed, Yang, Chen, Alexeev, Yuri, Yoshii, Kazutomo, Herbordt, Martin C

“…Real-time analysis of patient data during medical procedures can provide vital diagnostic feedback that significantly improves chances of success. With sensors…”
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AWB-GCN: A Graph Convolutional Network Accelerator with Runtime Workload Rebalancing by Geng, Tong, Li, Ang, Shi, Runbin, Wu, Chunshu, Wang, Tianqi, Li, Yanfei, Haghi, Pouya, Tumeo, Antonino, Che, Shuai, Reinhardt, Steve, Herbordt, Martin C.

“…Deep learning systems have been successfully applied to Euclidean data such as images, video, and audio. In many applications, however, information and their…”
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Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations by Gu, Yongfeng, VanCourt, Tom, Herbordt, Martin C.

“…FPGA-based acceleration of molecular dynamics simulations (MD) has been the subject of several recent studies. The short-range force computation, which…”
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Families of FPGA-based accelerators for approximate string matching by Van Court, Tom, Herbordt, Martin C.

“…Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware…”
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Reconfigurable switches for high performance and flexible MPI collectives by Haghi, Pouya, Guo, Anqi, Xiong, Qingqing, Yang, Chen, Geng, Tong, Broaddus, Justin T., Marshall, Ryan, Schafer, Derek, Skjellum, Anthony, Herbordt, Martin C.

“…There has been much effort in offloading MPI collective operations into hardware. But while NIC‐based collective acceleration is well‐studied, offloading their…”
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Achieving High Performance with FPGA-Based Computing by Herbordt, Martin C., VanCourt, Tom, Gu, Yongfeng, Sukhwani, Bharat, Conti, Al, Model, Josh, DiSabello, Doug

“…Numerous application areas, including bioinformatics and computational biology, demand increasing amounts of processing capability. In many cases, the…”
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FPGAs in the Network and Novel Communicator Support Accelerate MPI Collectives by Haghi, Pouya, Guo, Anqi, Xiong, Qingqing, Patel, Rushi, Yang, Chen, Geng, Tong, Broaddus, Justin T., Marshall, Ryan, Skjellum, Anthony, Herbordt, Martin C.

“…MPI collective operations can often be performance killers in HPC applications; we seek to solve this bottleneck by offloading them to reconfigurable hardware…”
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Parallel discrete molecular dynamics simulation with speculation and in-order commitment by Khan, Md. Ashfaquzzaman, Herbordt, Martin C.

“…Discrete molecular dynamics simulation (DMD) uses simplified and discretized models enabling simulations to advance by event rather than by timestep. DMD is an…”
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Single pass streaming BLAST on FPGAs by Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom

“…Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to…”
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Computing Models for FPGA-Based Accelerators by Herbordt, Martin C., Gu, Yongfeng, VanCourt, Tom, Model, Josh, Sukhwani, Bharat, Chiu, Matt

“…Field-programmable gate arrays are widely considered accelerators for compute-intensive applications. A critical phase of FPGA application development is…”
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Workload Imbalance in HPC Applications: Effect on Performance of In-Network Processing by Haghi, Pouya, Guo, Anqi, Geng, Tong, Skjellum, Anthony, Herbordt, Martin C.

“…As HPC systems advance to exascale, communication networks are becoming ever more complex including, e.g., support for in-network processing. While critical in…”
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The Viability of Using Online Prediction to Perform Extra Work while Executing BSP Applications by Chen, Po Hao, Haghi, Pouya, Chung, Jae Yoon, Geng, Tong, West, Richard, Skjellum, Anthony, Herbordt, Martin C.

“…A fundamental problem in parallel processing is the difficulty in efficiently partitioning work: the result is that much of a parallel program's execution time…”
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Unlocking Performance-Programmability by Penetrating the Intel FPGA OpenCL Toolflow by Sanaullah, Ahmed, Herbordt, Martin C

“…Improved support for OpenCL has been an important step towards the mainstream adoption of FPGAs as compute resources. Current research has shown, however, that…”
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High Performance Communication on Reconfigurable Clusters by Sheng, Jiayi, Yang, Chen, Herbordt, Martin C.

“…FPGA clusters with the FPGAs directly linked through their Multi-Gigabit Transceivers (MGT) have a proven advantage over other commodity architectures for…”
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Accelerating MPI Message Matching through FPGA Offload by Xiong, Qingqing, Skjellum, Anthony, Herbordt, Martin C.

“…The Message Passing Interface (MPI) is the de facto communication standard for distributed-memory High-Performance Computing (HPC) systems. Ultra-low latency…”
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FPGA-Accelerated Particle-Grid Mapping by Sanaullah, Ahmed, Khoshparvar, Arash, Herbordt, Martin C.

“…Computing the forces derived from long-range electrostatics is a critical application and also a central part of Molecular Dynamics. Part of that computation,…”
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Hardware-efficient compressed sensing encoder designs for WBSNs by Jiayi Sheng, Chen Yang, Herbordt, Martin C.

“…Implanted sensors, as might be used with wireless body sensor networks, must have minimal size and power consumption. In this work we examine digital-based…”
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GPU optimizations for a production molecular docking code by Landaverde, Raphael, Herbordt, Martin C.

“…Modeling molecular docking is critical to both understanding life processes and designing new drugs. In previous work we created the first published…”
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3D FFTs on a Single FPGA by Humphries, Benjamin, Hansen Zhang, Jiayi Sheng, Landaverde, Raphael, Herbordt, Martin C.

“…The 3D FFT is critical in many physical simulations and image processing applications. On FPGAs, however, the 3D FFT was thought to be inefficient relative to…”
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Array control for high-performance SIMD systems by Herbordt, Martin C., Cravy, Jade, Zhang, Honghai

“…Although arrays of SIMD processing elements can be built with very high operating frequencies, problems exist in keeping the array busy. The inherent mismatch…”
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