Search Results - "Henkel, Ron"

Notions of similarity for systems biology models by Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar

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Ranked retrieval of Computational Biology models by Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar

“…The study of biological systems demands computational support. If targeting a biological problem, the reuse of existing computational models can save time and…”
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Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set by Menzel, Felix, Waltemath, Dagmar, Henkel, Ron

“…The German Medical Informatics Initiative (MII) aims to increase the interoperability and reuse of clinical routine data for research purposes. One important…”
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Combining computational models, semantic annotations and simulation experiments in a graph database by Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar

“…Model repositories such as the BioModels Database, the CellML Model Repository or JWS Online are frequently accessed to retrieve computational models of…”
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CovidGraph: a graph to fight COVID-19 by Gütebier, Lea, Bleimehl, Tim, Henkel, Ron, Munro, Jamie, Müller, Sebastian, Morgner, Axel, Laenge, Jakob, Pachauer, Anke, Erdl, Alexander, Weimar, Jens, Walther Langendorf, Kirsten, Vialard, Vincent, Liebig, Thorsten, Preusse, Martin, Waltemath, Dagmar, Jarasch, Alexander

“…SUMMARYReliable and integrated data are prerequisites for effective research on the recent coronavirus disease 2019 (COVID-19) pandemic. The CovidGraph project…”
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Exploring Use Cases for CovidGraph by Gütebier, Lea, Henkel, Ron, Niklas, Christian, Waltemath, Dagmar

“…HealthECCO is the driving force behind the COVID-19 knowledge graph spanning multiple biomedical data domains. One way to access CovidGraph is SemSpect, an…”
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Notions of similarity for systems biology models by Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar

“…Abstract Systems biology models are rapidly increasing in complexity, size and numbers. When building large models, researchers rely on software tools for the…”
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Graph databases in systems biology: a systematic review by Mazein, Ilya, Rougny, Adrien, Mazein, Alexander, Henkel, Ron, Gütebier, Lea, Michaelis, Lea, Ostaszewski, Marek, Schneider, Reinhard, Satagopam, Venkata, Jensen, Lars Juhl, Waltemath, Dagmar, Wodke, Judith A H, Balaur, Irina

“…Graph databases are becoming increasingly popular across scientific disciplines, being highly suitable for storing and connecting complex heterogeneous data…”
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Situation Model for Situation-Aware Assistance of Dementia Patients in Outdoor Mobility by Yordanova, Kristina, Koldrack, Philipp, Heine, Christina, Henkel, Ron, Martin, Mike, Teipel, Stefan, Kirste, Thomas

“…Dementia impairs spatial orientation and route planning, thus often affecting the patient's ability to move outdoors and maintain social activities…”
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The MeDaX Knowledge Graph Prototype by Wodke, Judith A H, Michaelis, Lea, Henkel, Ron

“…Data sharing is sustainable for several reasons, including minimising economical and human costs or maximising knowledge gain. Still, reuse of biomedical…”
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STON: exploring biological pathways using the SBGN standard and graph databases by Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles

“…When modeling in Systems Biology and Systems Medicine, the data is often extensive, complex and heterogeneous. Graphs are a natural way of representing…”
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Improving the reuse of computational models through version control by Waltemath, Dagmar, Henkel, Ron, Hälke, Robert, Scharm, Martin, Wolkenhauer, Olaf

“…Only models that are accessible to researchers can be reused. As computational models evolve over time, a number of different but related versions of a model…”
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Identifying frequent patterns in biochemical reaction networks: a workflow by Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron

“…Computational models in biology encode molecular and cell biological processes. Many of these models can be represented as biochemical reaction networks…”
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Annotation-based feature extraction from sets of SBML models by Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron

“…Model repositories such as BioModels Database provide computational models of biological systems for the scientific community. These models contain rich…”
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CovidGraph: Integrating COVID-19 Data by Henkel, Ron, Guetebier, Lea, Waltemath, Dagmar

“…CovidGraph, developed by the HealthECCO community, is a platform designed to foster research and data exploration to fight COVID-19. It is built on a graph…”
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MeDaX: A Knowledge Graph on FHIR by Mazein, Ilya, Gebhardt, Tom, Zinkewitz, Felix, Michaelis, Lea, Braun, Sarah, Waltemath, Dagmar, Henkel, Ron, Wodke, Judith A H

“…In Germany, the standard format for exchange of clinical care data for research is HL7 FHIR. Graph databases (GDBs), well suited for integrating complex and…”
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Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen by Waltemath, Dagmar, Henkel, Ron, Meyer, Holger, Heuer, Andreas

“…Zusammenfassung Die Wiederverwendung von Simulationsmodellen biologischer Systeme ist mit der ansteigenden Zahl der in Modelldatenbanken gespeicherten Modelle…”
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Supporting situation awareness of dementia patients in outdoor environments by Koldrack, Philipp, Henkel, Ron, Kruger, Frank, Teipel, Stefan, Kirste, Thomas

“…Engagement in cognitively stimulating activities is today among the most effective measures against the decline of cognitive abilities due to dementing…”
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