Search Results - "Hendrix, Roger W."

Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere by KRUPOVIC, Mart, PRANGISHVILI, David, HENDRIX, Roger W, BAMFORD, Dennis H

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Phamerator: a bioinformatic tool for comparative bacteriophage genomics by Cresawn, Steven G, Bogel, Matt, Day, Nathan, Jacobs-Sera, Deborah, Hendrix, Roger W, Hatfull, Graham F

“…Bacteriophage genomes have mosaic architectures and are replete with small open reading frames of unknown function, presenting challenges in their annotation,…”
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Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity by Pope, Welkin H, Bowman, Charles A, Russell, Daniel A, Jacobs-Sera, Deborah, Asai, David J, Cresawn, Steven G, Jacobs, William R, Hendrix, Roger W, Lawrence, Jeffrey G, Hatfull, Graham F

“…The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the…”
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Capsids and Genomes of Jumbo-Sized Bacteriophages Reveal the Evolutionary Reach of the HK97 Fold by Hua, Jianfei, Huet, Alexis, Lopez, Carlos A, Toropova, Katerina, Pope, Welkin H, Duda, Robert L, Hendrix, Roger W, Conway, James F

“…Large icosahedral viruses that infect bacteria represent an extreme of the coevolution of capsids and the genomes they accommodate. One subset of these large…”
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Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system by Fung, Herman K H, Grimes, Shelley, Huet, Alexis, Duda, Robert L, Chechik, Maria, Gault, Joseph, Robinson, Carol V, Hendrix, Roger W, Jardine, Paul J, Conway, James F, Baumann, Christoph G, Antson, Alfred A

“…Abstract Many essential cellular processes rely on substrate rotation or translocation by a multi-subunit, ring-type NTPase. A large number of double-stranded…”
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Raw sewage harbors diverse viral populations by Cantalupo, Paul G, Calgua, Byron, Zhao, Guoyan, Hundesa, Ayalkibet, Wier, Adam D, Katz, Josh P, Grabe, Michael, Hendrix, Roger W, Girones, Rosina, Wang, David, Pipas, James M

“…At this time, about 3,000 different viruses are recognized, but metagenomic studies suggest that these viruses are a small fraction of the viruses that exist…”
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On the nature of mycobacteriophage diversity and host preference by Jacobs-Sera, Deborah, Marinelli, Laura J, Bowman, Charles, Broussard, Gregory W, Guerrero Bustamante, Carlos, Boyle, Michelle M, Petrova, Zaritza O, Dedrick, Rebekah M, Pope, Welkin H, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) program, Modlin, Robert L, Hendrix, Roger W, Hatfull, Graham F

“…Abstract The complete genome sequences of over 220 mycobacteriophages reveal them to be highly diverse, with numerous types sharing little or no nucleotide…”
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Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story by Pietilä, Maija K., Laurinmäki, Pasi, Russell, Daniel A., Ko, Ching-Chung, Jacobs-Sera, Deborah, Hendrix, Roger W., Bamford, Dennis H., Butcher, Sarah J.

“…It has been proposed that viruses can be divided into a small number of structure-based viral lineages. One of these lineages is exemplified by bacterial virus…”
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Bacteriophage HK97 capsid assembly and maturation by Hendrix, Roger W, Johnson, John E

“…The Escherichia coli phage HK97 has provided a productive experimental system for investigating how virus capsids are assembled from their protein components…”
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An unexpected twist in viral capsid maturation by Johnson, John E, Duda, Robert L, Komives, Elizabeth A, Gan, Lu, Gertsman, Ilya, Lee, Kelly, Hendrix, Roger W, Guttman, Miklos, Speir, Jeffrey A

“…Lambda-like double-stranded (ds) DNA bacteriophage undergo massive conformational changes in their capsid shell during the packaging of their viral genomes…”
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Insights into Head-Tailed Viruses Infecting Extremely Halophilic Archaea by Pietilä, Maija K, Laurinmäki, Pasi, Russell, Daniel A, Ko, Ching-Chung, Jacobs-Sera, Deborah, Butcher, Sarah J, Bamford, Dennis H, Hendrix, Roger W

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Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform by Hatfull, Graham F, Pedulla, Marisa L, Jacobs-Sera, Deborah, Cichon, Pauline M, Foley, Amy, Ford, Michael E, Gonda, Rebecca M, Houtz, Jennifer M, Hryckowian, Andrew J, Kelchner, Vanessa A, Namburi, Swathi, Pajcini, Kostandin V, Popovich, Mark G, Schleicher, Donald T, Simanek, Brian Z, Smith, Alexis L, Zdanowicz, Gina M, Kumar, Vanaja, Peebles, Craig L, Jacobs, Jr, William R, Lawrence, Jeffrey G, Hendrix, Roger W

“…Bacteriophages are the most abundant forms of life in the biosphere and carry genomes characterized by high genetic diversity and mosaic architectures. The…”
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Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action by Zaworski, Julie, McClung, Colleen, Ruse, Cristian, Weigele, Peter R, Hendrix, Roger W, Ko, Ching-Chung, Edgar, Robert, Hatfull, Graham F, Casjens, Sherwood R, Raleigh, Elisabeth A

“…Bacteriophage L, a P22-like phage of Salmonella enterica sv Typhimurium LT2, was important for definition of mosaic organization of the lambdoid phage family…”
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Bacteriophage lambda: Early pioneer and still relevant by Casjens, Sherwood R, Hendrix, Roger W

“…Abstract Molecular genetic research on bacteriophage lambda carried out during its golden age from the mid-1950s to mid-1980s was critically important in the…”
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Origins of Highly Mosaic Mycobacteriophage Genomes by Pedulla, Marisa L, Ford, Michael E, Houtz, Jennifer M, Karthikeyan, Tharun, Wadsworth, Curtis, Lewis, John A, Jacobs-Sera, Debbie, Falbo, Jacob, Gross, Joseph, Pannunzio, Nicholas R, Brucker, William, Kumar, Vanaja, Kandasamy, Jayasankar, Keenan, Lauren, Bardarov, Svetsoslav, Kriakov, Jordan, Lawrence, Jeffrey G, Jacobs, William R, Hendrix, Roger W, Hatfull, Graham F

“…Bacteriophages are the most abundant organisms in the biosphere and play major roles in the ecological balance of microbial life. The genomic sequences of ten…”
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The Genome of Bacillus subtilis Bacteriophage SPO1 by Stewart, Charles R., Casjens, Sherwood R., Cresawn, Steven G., Houtz, Jennifer M., Smith, Alexis L., Ford, Michael E., Peebles, Craig L., Hatfull, Graham F., Hendrix, Roger W., Huang, Wai Mun, Pedulla, Marisa L.

“…We report the genome sequence of Bacillus subtilis phage SPO1. The unique genome sequence is 132,562 bp long, and DNA packaged in the virion (the chromosome)…”
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Genomic Characterization of Mycobacteriophage Giles: Evidence for Phage Acquisition of Host DNA by Illegitimate Recombination by MORRIS, Peter, MARINELLI, Laura J, JACOBS-SERA, Deborah, HENDRIX, Roger W, HATFULL, Graham F

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Evolutionary Relationships among Actinophages and a Putative Adaptation for Growth in Streptomyces spp by Smith, Margaret C. M, Hendrix, Roger W, Dedrick, Rebekah, Mitchell, Kaitlin, Ko, Ching-Chung, Russell, Daniel, Bell, Emma, Gregory, Matthew, Bibb, Maureen J, Pethick, Florence, Jacobs-Sera, Deborah, Herron, Paul, Buttner, Mark J, Hatfull, Graham F

“…The genome sequences of eight Streptomyces phages are presented, four of which were isolated for this study. Phages R4, TG1, ϕHau3, and SV1 were isolated…”
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Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotypes by Pope, Welkin H, Anders, Kirk R, Baird, Madison, Bowman, Charles A, Boyle, Michelle M, Broussard, Gregory W, Chow, Tiffany, Clase, Kari L, Cooper, Shannon, Cornely, Kathleen A, DeJong, Randall J, Delesalle, Veronique A, Deng, Lisa, Dunbar, David, Edgington, Nicholas P, Ferreira, Christina M, Weston Hafer, Kathleen, Hartzog, Grant A, Hatherill, J Robert, Hughes, Lee E, Ipapo, Khristina, Krukonis, Greg P, Meier, Christopher G, Monti, Denise L, Olm, Matthew R, Page, Shallee T, Peebles, Craig L, Rinehart, Claire A, Rubin, Michael R, Russell, Daniel A, Sanders, Erin R, Schoer, Morgan, Shaffer, Christopher D, Wherley, James, Vazquez, Edwin, Yuan, Han, Zhang, Daiyuan, Cresawn, Steven G, Jacobs-Sera, Deborah, Hendrix, Roger W, Hatfull, Graham F

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Topologically Linked Protein Rings in the Bacteriophage HK97 Capsid by Wikoff, William R., Liljas, Lars, Duda, Robert L., Tsuruta, Hiro, Hendrix, Roger W., Johnson, John E.

“…The crystal structure of the double-stranded DNA bacteriophage HK97 mature empty capsid was determined at 3.6 angstrom resolution. The 660 angstrom diameter…”
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