OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data

OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context. Availability: Implemented in Java, OmicsAnalyzer...

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Bibliographic Details
Published in:	Bioinformatics Vol. 26; no. 23; pp. 2995 - 2996
Main Authors:	Xia, Tian, Hemert, John V., Dickerson, Julie A.
Format:	Journal Article
Language:	English
Published:	Oxford Oxford University Press 01-12-2010
Subjects:	Applications Note Biological and medical sciences Data Interpretation, Statistical Fundamental and applied biological sciences. Psychology Gene Expression Profiling Gene Regulatory Networks General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Models, Biological Models, Genetic Software Modeling Data
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Summary:	OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context. Availability: Implemented in Java, OmicsAnalyzer runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/omicsanalyzer/ Contact: julied@iastate.edu; netscape@iastate.edu
Bibliography:	ArticleID:btq583 istex:EB90DF24FD658F27E5438FBD266F7ECF0D563632 ark:/67375/HXZ-ZSFJ5PGZ-9 To whom correspondence should be addressed. Associate Editor: Joaquin Dopazo ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23
ISSN:	1367-4803 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/btq583