Search Results - "Helt, Gregg"

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets by Nicol, John W., Helt, Gregg A., Blanchard, Steven G., Raja, Archana, Loraine, Ann E.

“…Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation…”
Get full text

RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription by Kapranov, Philipp, Cheng, Jill, Dike, Sujit, Nix, David A., Duttagupta, Radharani, Willingham, Aarron T., Stadler, Peter F., Hertel, Jana, Hackermüller, Jörg, Hofacker, Ivo L., Bell, Ian, Cheung, Evelyn, Drenkow, Jorg, Dumais, Erica, Patel, Sandeep, Helt, Gregg, Ganesh, Madhavan, Ghosh, Srinka, Piccolboni, Antonio, Sementchenko, Victor, Tammana, Hari, Gingeras, Thomas R.

“…Significant fractions of eukaryotic genomes give rise to RNA, much of which is unannotated and has reduced protein-coding potential. The genomic origins and…”
Get full text

Web Apollo: a web-based genomic annotation editing platform by Lee, Eduardo, Helt, Gregg A, Reese, Justin T, Munoz-Torres, Monica C, Childers, Chris P, Buels, Robert M, Stein, Lincoln, Holmes, Ian H, Elsik, Christine G, Lewis, Suzanna E

“…Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current…”
Get full text

Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution by Cheng, Jill, Kapranov, Philipp, Drenkow, Jorg, Dike, Sujit, Brubaker, Shane, Patel, Sandeep, Long, Jeffrey, Stern, David, Tammana, Hari, Helt, Gregg, Sementchenko, Victor, Piccolboni, Antonio, Bekiranov, Stefan, Bailey, Dione K., Ganesh, Madhavan, Ghosh, Srinka, Bell, Ian, Gerhard, Daniela S., Gingeras, Thomas R.

“…Sites of transcription of polyadenylated and nonpolyadenylated RNAs for 10 human chromosomes were mapped at 5-base pair resolution in eight cell lines…”
Get full text

Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs by Cawley, Simon, Bekiranov, Stefan, Ng, Huck H, Kapranov, Philipp, Sekinger, Edward A, Kampa, Dione, Piccolboni, Antonio, Sementchenko, Victor, Cheng, Jill, Williams, Alan J, Wheeler, Raymond, Wong, Brant, Drenkow, Jorg, Yamanaka, Mark, Patel, Sandeep, Brubaker, Shane, Tammana, Hari, Helt, Gregg, Struhl, Kevin, Gingeras, Thomas R

“…Using high-density oligonucleotide arrays representing essentially all nonrepetitive sequences on human chromosomes 21 and 22, we map the binding sites in vivo…”
Get full text

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays by Kapranov, Philipp, Drenkow, Jorg, Cheng, Jill, Long, Jeffrey, Helt, Gregg, Dike, Sujit, Gingeras, Thomas R

“…Recently, we mapped the sites of transcription across approximately 30% of the human genome and elucidated the structures of several hundred novel transcripts…”
Get full text

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 by Kampa, Dione, Cheng, Jill, Kapranov, Philipp, Yamanaka, Mark, Brubaker, Shane, Cawley, Simon, Drenkow, Jorg, Piccolboni, Antonio, Bekiranov, Stefan, Helt, Gregg, Tammana, Hari, Gingeras, Thomas R

“…In this report, we have achieved a richer view of the transcriptome for Chromosomes 21 and 22 by using high-density oligonucleotide arrays on cytosolic…”
Get full text

Genoviz Software Development Kit: Java tool kit for building genomics visualization applications by Helt, Gregg A, Nicol, John W, Erwin, Ed, Blossom, Eric, Blanchard, Jr, Steven G, Chervitz, Stephen A, Harmon, Cyrus, Loraine, Ann E

“…Visualization software can expose previously undiscovered patterns in genomic data and advance biological science. The Genoviz Software Development Kit (SDK)…”
Get full text

Visualizing the genome: techniques for presenting human genome data and annotations by Loraine, Ann E, Helt, Gregg A

“…In order to take full advantage of the newly available public human genome sequence data and associated annotations, biologists require visualization tools…”
Get full text

JBrowse: a dynamic web platform for genome visualization and analysis by Buels, Robert, Yao, Eric, Diesh, Colin M, Hayes, Richard D, Munoz-Torres, Monica, Helt, Gregg, Goodstein, David M, Elsik, Christine G, Lewis, Suzanna E, Stein, Lincoln, Holmes, Ian H

“…JBrowse is a fast and full-featured genome browser built with JavaScript and HTML5. It is easily embedded into websites or apps but can also be served as a…”
Get full text

Exploring alternative transcript structure in the human genome using blocks and InterPro by Loraine, Ann E, Helt, Gregg A, Cline, Melissa S, Siani-Rose, Michael A

“…Understanding how alternative splicing affects gene function is an important challenge facing modern-day molecular biology. Using homology-based, protein…”
Get more information

Extending Mandelbox Fractals with Shape Inversions by Helt, Gregg

“…The Mandelbox is a recently discovered class of escape-time fractals which use a conditional combination of reflection, spherical inversion, scaling, and…”
Get full text

Data visualization and gene discovery in Drosophila melanogaster by Helt, Gregg Alan

“…Publicly available sequence information and computing power are both increasing at phenomenal rates. This has triggered an explosion in bioinformatics, where…”
Get full text

BioViews: Java-based tools for genomic data visualization by Helt, G A, Lewis, S, Loraine, A E, Rubin, G M

“…Visualization tools for bioinformatics ideally should provide universal access to the most current data in an interactive and intuitive graphical user…”
Get full text

Data visualization and gene discovery in Drosophila melanogaster by Helt, Gregg Alan

“…Publicly available sequence information and computing power are both increasing at phenomenal rates. This has triggered an explosion in bioinformatics, where…”
Get full text

Visualization techniques for genomic data by Loraine, A.E., Helt, G.A.

“…In order to take full advantage of the newly available public human genome sequence data and associated annotations, biologists require visualization tools…”
Get full text

Protein-based analysis of alternative splicing in the human genome by Loraine, A.E., Helt, G.A., Cline, M.S., Siani-Rose, M.A.

“…Understanding the functional significance of alternative splicing and other mechanisms that generate RNA transcript diversity is an important challenge facing…”
Get full text