Search Results - "He, Caisheng"

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    Missing value imputation for microarray gene expression data using histone acetylation information by Xiang, Qian, Dai, Xianhua, Deng, Yangyang, He, Caisheng, Wang, Jiang, Feng, Jihua, Dai, Zhiming

    Published in BMC bioinformatics (29-05-2008)
    “…It is an important pre-processing step to accurately estimate missing values in microarray data, because complete datasets are required in numerous expression…”
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    Journal Article
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    New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome by Feng, Jihua, Dai, Xianhua, Xiang, Qian, Dai, Zhiming, Wang, Jiang, Deng, Yangyang, He, Caisheng

    Published in BMC genomics (15-01-2010)
    “…Recently, a number of high-resolution genome-wide maps of nucleosome locations in S. cerevisiae have been derived experimentally. However, nucleosome positions…”
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    Journal Article
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    Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae by Deng, Yangyang, Dai, Xianhua, Xiang, Qian, Dai, Zhiming, He, Caisheng, Wang, Jiang, Feng, Jihua

    Published in BMC genomics (09-10-2010)
    “…Neighboring gene pairs in the genome of Saccharomyces cerevisiae have a tendency to be expressed at the same time. The distribution of histone modifications…”
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    Journal Article
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    Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications by Dai, Zhiming, Dai, Xianhua, Xiang, Qian, Feng, Jihua, Wang, Jiang, Deng, Yangyang, He, Caisheng

    Published in BMC genomics (08-07-2009)
    “…ATP-dependent chromatin remodeling and the covalent modification of histones play central roles in determining chromatin structure and function. Although…”
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    Journal Article
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    Transcriptional interaction-assisted identification of dynamic nucleosome positioning by Dai, Zhiming, Dai, Xianhua, Xiang, Qian, Feng, Jihua, Deng, Yangyang, Wang, Jiang, He, Caisheng

    Published in BMC bioinformatics (30-01-2009)
    “…Nucleosomes regulate DNA accessibility and therefore play a central role in transcription control. Computational methods have been developed to predict static…”
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    Journal Article
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    Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence by Dai, Zhiming, Dai, Xianhua, Xiang, Qian, Feng, Jihua, Wang, Jiang, Deng, Yangyang, He, Caisheng

    Published in BMC genomics (10-01-2009)
    “…The nucleosome is the fundamental unit of eukaryotic genomes. Its positioning plays a central role in diverse cellular processes that rely on access to genomic…”
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    Journal Article
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    A simulation model for nucleosome distribution in the yeast genome based on integrated cross-platform positioning datasets by Feng, Jihua, Dai, Xianhua, Dai, Zhiming, Xiang, Qian, Wang, Jiang, Deng, Yangyang, He, Caisheng

    Published in Mathematical and computer modelling (01-12-2010)
    “…In-depth analysis of six recent experimental nucleosome datasets in the yeast reveals broad disagreements between the final nucleosome positions detected by…”
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    Journal Article Conference Proceeding
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    Identifying the Combinatorial Effects of Histone Modifications by Association Rule Mining in Yeast by Wang, Jiang, Dai, Xianhua, Xiang, Qian, Deng, Yangyang, Feng, Jihua, Dai, Zhiming, He, Caisheng

    Published in Evolutionary bioinformatics online (01-01-2010)
    “…Jiang Wang, Xianhua Dai, Qian Xiang, Yangyang Deng, Jihua Feng, Zhiming Dai and Caisheng HeDepartment of Electronics and Communications Engineering, School of…”
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    Journal Article
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    Development of a self-constrained 3D DenseNet model in automatic detection and segmentation of nasopharyngeal carcinoma using magnetic resonance images by Ke, Liangru, Deng, Yishu, Xia, Weixiong, Qiang, Mengyun, Chen, Xi, Liu, Kuiyuan, Jing, Bingzhong, He, Caisheng, Xie, Chuanmiao, Guo, Xiang, Lv, Xing, Li, Chaofeng

    Published in Oral oncology (01-11-2020)
    “…•A dual-task AI model was developed to detect and segment NPC in MRI automatically.•The model showed higher overall accuracy than experienced radiologists to…”
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    Journal Article
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    A deep survival analysis method based on ranking by Jing, Bingzhong, Zhang, Tao, Wang, Zixian, Jin, Ying, Liu, Kuiyuan, Qiu, Wenze, Ke, Liangru, Sun, Ying, He, Caisheng, Hou, Dan, Tang, Linquan, Lv, Xing, Li, Chaofeng

    Published in Artificial intelligence in medicine (01-07-2019)
    “…•The proposed RankDeepSurv is superior to three state-of-the-art survival models.•This paper proposes a loss function based on regression and rank constraints…”
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    Journal Article
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    Seasonal and vegetational variations of culturable bacteria concentrations in air from urban forest parks: a case study in Hunan, China by Liao, Zhen-Ni, Xu, Hui-Juan, Ma, Jiaojiao, Li, Maojuan, He, Caisheng, Zhang, Qiongrui, Xu, Songjun

    “…It is important to investigate the airborne bacterial air quality in urban forest parks as tree bacteriostasis practices are being increasingly advocated as…”
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    Journal Article
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    Identification of DNA motifs by two different models by Caisheng He, Xianhua Dai

    “…The identification of DNA regulatory motifs (transcription factor binding sites) in co-regulated genes is essential for understanding the regulatory…”
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    Conference Proceeding
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    Insights into the combinatorial effects of histone modifications in yeast using association rule mining by Jiang Wang, Xianhua Dai, Qian Xiang, Yangyang Deng, Jihua Feng, Zhiming Dai, Caisheng He

    “…Eukaryotic genomes are packaged into chromatin by histone proteins whose chemical modification can profoundly influence gene expression. The histone…”
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    Conference Proceeding
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    Identifying the Combinatorial Effects of Histone Modifications by Association Rule Mining in Yeast by Caisheng He, Zhiming Dai, Jihua Feng, Yangyang Deng, Qian Xiang, Xianhua Dai, Jiang Wang

    Published in Evolutionary bioinformatics online (01-09-2010)
    “…Eukaryotic genomes are packaged into chromatin by histone proteins whose chemical modification can profoundly influence gene expression. The histone…”
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    Journal Article
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    基于内镜图像深度学习的鼻咽恶性肿瘤检测 模型的建立与验证 by Chaofeng Li, Bingzhong Jing, Liangru Ke, Bin Li, Weixiong Xia, Caisheng He, Chaonan Qian, Chong Zhao, Haiqiang Mai, Mingyuan Chen, Kajia Cao, Haoyuan Mo, Ling Guo, Qiuyan Chen, Linquan Tang, Wenze Qiu, Yahui Yu, Hu Liang, Xinjun Huang, Guoying Liu, Wangzhong Li, Lin Wang, Rui Sun, Xiong Zou, Shanshan Guo, Peiyu Huang, Donghua Luo, Fang Qiu, Yishan Wu, Yijun Hua, Kuiyuan Liu, Shuhui Lv, Jingjing Miao, Yanqun Xiang, Ying Sun, Xiang Guo, Xing Lv

    Published in 癌症 (2019)
    “…背景与目的 由于鼻咽部解剖位置隐匿且腺体增生频发,活检时恶性肿瘤的阳性率较低,从而导致初诊时鼻咽恶性肿瘤确诊延时或漏诊.本文旨在建立一种人工智能工具——基于深度学习的内镜检查,来检测鼻咽恶性肿瘤.方法 建立了一种基于内镜图像的鼻咽恶性肿瘤检测模型(endoscopic images-based…”
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    Journal Article
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    A position-slots model for nucleosome assembly in the yeast genome based on integrated multi-platform positioning dataseis by Jihua Feng, Xianhua Dai, Qian Xiang, Zhiming Dai, Jiang Wang, Yangyang Deng, Caisheng He

    “…In-depth analysis of the recent five experimental nucleosome datasets reveals the broad disagreements between the final nucleosome positions detected by the…”
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    Conference Proceeding