Search Results - "Hazarika, Rashmi R."

Mass-spectrometry-based draft of the Arabidopsis proteome by Mergner, Julia, Frejno, Martin, List, Markus, Papacek, Michael, Chen, Xia, Chaudhary, Ajeet, Samaras, Patroklos, Richter, Sandra, Shikata, Hiromasa, Messerer, Maxim, Lang, Daniel, Altmann, Stefan, Cyprys, Philipp, Zolg, Daniel P., Mathieson, Toby, Bantscheff, Marcus, Hazarika, Rashmi R., Schmidt, Tobias, Dawid, Corinna, Dunkel, Andreas, Hofmann, Thomas, Sprunck, Stefanie, Falter-Braun, Pascal, Johannes, Frank, Mayer, Klaus F. X., Jürgens, Gerd, Wilhelm, Mathias, Baumbach, Jan, Grill, Erwin, Schneitz, Kay, Schwechheimer, Claus, Kuster, Bernhard

“…Plants are essential for life and are extremely diverse organisms with unique molecular capabilities 1 . Here we present a quantitative atlas of the…”
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MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data by Shahryary, Yadollah, Hazarika, Rashmi R, Johannes, Frank

“…Whole-Genome Bisulfite Sequencing (WGBS) is a Next Generation Sequencing (NGS) technique for measuring DNA methylation at base resolution. Continuing drops in…”
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Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation by Wendte, Jered M, Zhang, Yinwen, Ji, Lexiang, Shi, Xiuling, Hazarika, Rashmi R, Shahryary, Yadollah, Johannes, Frank, Schmitz, Robert J

“…In many plant species, a subset of transcribed genes are characterized by strictly CG-context DNA methylation, referred to as gene body methylation (gbM). The…”
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AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants by Shahryary, Yadollah, Symeonidi, Aikaterini, Hazarika, Rashmi R., Denkena, Johanna, Mubeen, Talha, Hofmeister, Brigitte, van Gurp, Thomas, Colomé-Tatché, Maria, Verhoeven, Koen J.F., Tuskan, Gerald, Schmitz, Robert J., Johannes, Frank

“…Abstract Stochastic changes in DNA methylation (i.e., spontaneous epimutations) contribute to methylome diversity in plants. Here, we describe AlphaBeta , a…”
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Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana by Hazarika, Rashmi R, Sostaric, Nikolina, Sun, Yifeng, van Noort, Vera

“…Several recent studies indicate that small Open Reading Frames (sORFs) embedded within multiple eukaryotic non-coding RNAs can be translated into bioactive…”
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ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana by Hazarika, Rashmi R, De Coninck, Barbara, Yamamoto, Lidia R, Martin, Laura R, Cammue, Bruno P A, van Noort, Vera

“…Many eukaryotic RNAs have been considered non-coding as they only contain short open reading frames (sORFs). However, there is increasing evidence for the…”
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A suppressor of axillary meristem maturation promotes longevity in flowering plants by Karami, Omid, Rahimi, Arezoo, Khan, Majid, Bemer, Marian, Hazarika, Rashmi R., Mak, Patrick, Compier, Monique, van Noort, Vera, Offringa, Remko

“…Post-embryonic development and longevity of flowering plants are, for a large part, determined by the activity and maturation state of stem cell niches formed…”
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Mass spectrometry-based draft of the mouse proteome by Giansanti, Piero, Samaras, Patroklos, Bian, Yangyang, Meng, Chen, Coluccio, Andrea, Frejno, Martin, Jakubowsky, Hannah, Dobiasch, Sophie, Hazarika, Rashmi R., Rechenberger, Julia, Calzada-Wack, Julia, Krumm, Johannes, Mueller, Sebastian, Lee, Chien-Yun, Wimberger, Nicole, Lautenbacher, Ludwig, Hassan, Zonera, Chang, Yun-Chien, Falcomatà, Chiara, Bayer, Florian P., Bärthel, Stefanie, Schmidt, Tobias, Rad, Roland, Combs, Stephanie E., The, Matthew, Johannes, Frank, Saur, Dieter, de Angelis, Martin Hrabe, Wilhelm, Mathias, Schneider, Günter, Kuster, Bernhard

“…The laboratory mouse ranks among the most important experimental systems for biomedical research and molecular reference maps of such models are essential…”
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Molecular properties of epimutation hotspots by Hazarika, Rashmi R., Serra, Michele, Zhang, Zhilin, Zhang, Yinwen, Schmitz, Robert J., Johannes, Frank

“…Mistakes in the maintenance of CG methylation are a source of heritable epimutations in plants. Multigenerational surveys indicate that the rate of these…”
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Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole-Genome Duplication by Zhang, Zhicheng, Coenen, Heleen, Ruelens, Philip, Hazarika, Rashmi R., Hindi, Tareq Al, Oguis, Georgianna K., Vandeperre, Anja, van Noort, Vera, Geuten, Koen

“…The evolution of plants is characterized by whole-genome duplications, sometimes closely associated with the origin of large groups of species. The gamma (γ)…”
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