Search Results - "Haynes, Paul"

A universal protocol for high-quality DNA and RNA isolation from diverse plant species by Masoomi-Aladizgeh, Farhad, Jabbari, Leila, Khayam Nekouei, Reza, Aalami, Ali, Atwell, Brian J, Haynes, Paul A

“…Next-generation sequencing demands high-quality nucleic acid, yet isolating DNA and RNA is often challenging, particularly from plant tissues. Despite advances…”
Get full text

Less label, more free: Approaches in label-free quantitative mass spectrometry by Neilson, Karlie A, Ali, Naveid A, Muralidharan, Sridevi, Mirzaei, Mehdi, Mariani, Michael, Assadourian, Gariné, Lee, Albert, van Sluyter, Steven C, Haynes, Paul A

“…In this review we examine techniques, software, and statistical analyses used in label-free quantitative proteomics studies for area under the curve and…”
Get full text

Multiple testing corrections in quantitative proteomics: A useful but blunt tool by Pascovici, Dana, Handler, David C. L., Wu, Jemma X., Haynes, Paul A.

“…Multiple testing corrections are a useful tool for restricting the FDR, but can be blunt in the context of low power, as we demonstrate by a series of simple…”
Get full text

Pediatric Orthopedics by Haynes, Paul T.

Get full text

Unique and Shared Proteome Responses of Rice Plants ( Oryza sativa ) to Individual Abiotic Stresses by Habibpourmehraban, Fatemeh, Atwell, Brian J, Haynes, Paul A

“…Food safety of staple crops such as rice is of global concern and is at the top of the policy agenda worldwide. Abiotic stresses are one of the main…”
Get full text

Pre-Treatment of Rice Plants with ABA Makes Them More Tolerant to Multiple Abiotic Stress by Habibpourmehraban, Fatemeh, Wu, Yunqi, Masoomi-Aladizgeh, Farhad, Amirkhani, Ardeshir, Atwell, Brian J, Haynes, Paul A

“…Multiple abiotic stress is known as a type of environmental unfavourable condition maximizing the yield and growth gap of crops compared with the optimal…”
Get full text

MicroRNA Profiling of Root Meristematic Zone in Contrasting Genotypes Reveals Novel Insight into in Rice Response to Water Deficiency by Ghorbanzadeh, Zahra, Hamid, Rasmieh, Jacob, Feba, Mirzaei, Mehdi, Zeinalabedini, Mehrshad, Abdirad, Somayeh, Atwell, Brian J, Haynes, Paul A., Ghaffari, Mohammad Reza, Salekdeh, Ghasem Hosseini

“…Root system architecture (RSA) is critical for improving nutrient and water uptake and maintaining crop yield under both optimal and drought conditions. The…”
Get full text

Quantitative proteomic analysis of cold-responsive proteins in rice by Neilson, Karlie A., Mariani, Michael, Haynes, Paul A.

“…Rice is susceptible to cold stress and with a future of climatic instability we will be unable to produce enough rice to satisfy increasing demand. A thorough…”
Get full text

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes by Mirzaei, Mehdi, Gupta, Veer B., Chick, Joel M., Greco, Todd M., Wu, Yunqi, Chitranshi, Nitin, Wall, Roshana Vander, Hone, Eugene, Deng, Liting, Dheer, Yogita, Abbasi, Mojdeh, Rezaeian, Mahdie, Braidy, Nady, You, Yuyi, Salekdeh, Ghasem Hosseini, Haynes, Paul A., Molloy, Mark P., Martins, Ralph, Cristea, Ileana M., Gygi, Steven P., Graham, Stuart L., Gupta, Vivek K.

“…Abstarct Glaucoma is a chronic disease that shares many similarities with other neurodegenerative disorders of the central nervous system. This study was…”
Get full text

Plant–Microbe Symbiosis: What Has Proteomics Taught Us? by Khatabi, Behnam, Gharechahi, Javad, Ghaffari, Mohammad Reza, Liu, Dilin, Haynes, Paul A., McKay, Matthew J., Mirzaei, Mehdi, Salekdeh, Ghasem Hosseini

“…Beneficial microbes have a positive impact on the productivity and fitness of the host plant. A better understanding of the biological impacts and underlying…”
Get full text

Amyloid-beta and tau protein beyond Alzheimer's disease by Abyadeh, Morteza, Gupta, Vivek, Paulo, Joao A, Mahmoudabad, Arezoo Gohari, Shadfar, Sina, Mirshahvaladi, Shahab, Gupta, Veer, Nguyen, Christine T O, Finkelstein, David I, You, Yuyi, Haynes, Paul A, Salekdeh, Ghasem H, Graham, Stuart L, Mirzaei, Mehdi

“…The aggregation of amyloid-beta peptide and tau protein dysregulation are implicated to play key roles in Alzheimer's disease pathogenesis and are considered…”
Get full text

Differential regulation of aquaporins, small GTPases and V-ATPases proteins in rice leaves subjected to drought stress and recovery by Mirzaei, Mehdi, Pascovici, Dana, Atwell, Brian J., Haynes, Paul A.

“…Mechanisms of drought tolerance are complex, interacting, and polygenic. This paper describes patterns of gene expression at precise physiological stages of…”
Get full text

Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice by Scafaro, Andrew P., Haynes, Paul A., Atwell, Brian J.

“…Oryza meridionalis Ng. is a wild relative of Oryza sativa L. found throughout northern Australia where temperatures regularly exceed 35 °C in the monsoon…”
Get full text

Effect of ABA Pre-Treatment on Rice Plant Transcriptome Response to Multiple Abiotic Stress by Habibpourmehraban, Fatemeh, Masoomi-Aladizgeh, Farhad, Haynes, Paul A.

“…Half of the world’s population depends on rice plant cultivation, yet environmental stresses continue to substantially impact the production of one of our most…”
Get full text

The Art of Validating Quantitative Proteomics Data by Handler, David C., Pascovici, Dana, Mirzaei, Mehdi, Gupta, Vivek, Salekdeh, Ghasem Hosseini, Haynes, Paul A.

“…Western blotting as an orthogonal validation tool for quantitative proteomics data has rapidly become a de facto requirement for publication. In this viewpoint…”
Get full text

Pollen development in cotton (Gossypium hirsutum) is highly sensitive to heat exposure during the tetrad stage by Masoomi‐Aladizgeh, Farhad, Najeeb, Ullah, Hamzelou, Sara, Pascovici, Dana, Amirkhani, Ardeshir, Tan, Daniel K. Y., Mirzaei, Mehdi, Haynes, Paul A., Atwell, Brian J.

“…The development of gametes in plants is acutely susceptible to heatwaves as brief as a few days, adversely affecting pollen maturation and reproductive…”
Get full text

Genome survey sequencing of wild cotton (Gossypium robinsonii) reveals insights into proteomic responses of pollen to extreme heat by Masoomi‐Aladizgeh, Farhad, Kamath, Karthik Shantharam, Haynes, Paul A., Atwell, Brian J.

“…Heat stress specifically affects fertility by impairing pollen viability but cotton wild relatives successfully reproduce in hot savannas where they evolved…”
Get full text

Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism by George, Iniga S., Pascovici, Dana, Mirzaei, Mehdi, Haynes, Paul A.

“…Grapes (Vitis vinifera) are a valuable fruit crop and wine production is a major industry. Global warming and expanded range of cultivation will expose grapes…”
Get full text

Proteomic analysis during seed development provides insight into the early establishment of seed dormancy in Xanthium strumarium by Nemati, Iman, Hamzelou, Sara, Gholizadeh, Somayeh, Kamath, Karthik Shantharam, Haynes, Paul A., Sedghi, Mohammad, Afshari, Reza Tavakkol, Salekdeh, Ghasem Hosseini

“…This experiment was carried out to provide a comprehensive insight into the protein activities involved in dormancy establishment in seeds of common cocklebur…”
Get full text

Proteomes of Leaf‐Growing Zones in Rice Genotypes with Contrasting Drought Tolerance by Wu, Yunqi, Mirzaei, Mehdi, Pascovici, Dana, Haynes, Paul A., Atwell, Brian J.

“…Plants require a distinctive cohort of enzymes to coordinate cell division and expansion. Proteomic analysis now enables interrogation of immature leaf bases…”
Get full text