Search Results - "Hawley, Alyse K."

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes by Hawley, Alyse K., Brewer, Heather M., Norbeck, Angela D., Paša-Tolić, Ljiljana, Hallam, Steven J.

“…Marine oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified…”
Get full text

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients by Hawley, Alyse K., Nobu, Masaru K., Wright, Jody J., Durno, W. Evan, Morgan-Lang, Connor, Sage, Brent, Schwientek, Patrick, Swan, Brandon K., Rinke, Christian, Torres-Beltrán, Monica, Mewis, Keith, Liu, Wen-Tso, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J.

“…Microbial communities drive biogeochemical cycles through networks of metabolite exchange that are structured along energetic gradients. As energy yields…”
Get full text

Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration by Ataeian, Maryam, Liu, Yihua, Kouris, Angela, Hawley, Alyse K, Strous, Marc

“…Lack of robustness is a major barrier to foster a sustainable cyanobacterial biotechnology. Use of cyanobacterial consortium increases biodiversity, which…”
Get full text

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics by Roux, Simon, Hawley, Alyse K, Torres Beltran, Monica, Scofield, Melanie, Schwientek, Patrick, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J, Sullivan, Matthew B

“…Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus-host interaction dynamics remain…”
Get full text

CANT-HYD: A Curated Database of Phylogeny-Derived Hidden Markov Models for Annotation of Marker Genes Involved in Hydrocarbon Degradation by Khot, Varada, Zorz, Jackie, Gittins, Daniel A, Chakraborty, Anirban, Bell, Emma, Bautista, María A, Paquette, Alexandre J, Hawley, Alyse K, Novotnik, Breda, Hubert, Casey R J, Strous, Marc, Bhatnagar, Srijak

“…Many pathways for hydrocarbon degradation have been discovered, yet there are no dedicated tools to identify and predict the hydrocarbon degradation potential…”
Get full text

Computational approaches in viral ecology by Khot, Varada, Strous, Marc, Hawley, Alyse K.

“…[Display omitted] •Computational methodologies for studying double-stranded DNA viruses.•Tools for viral sequence identification from metagenomic…”
Get full text

Proteome and strain analysis of cyanobacterium Candidatus “Phormidium alkaliphilum” reveals traits for success in biotechnology by Ataeian, Maryam, Vadlamani, Agasteswar, Haines, Marianne, Mosier, Damon, Dong, Xiaoli, Kleiner, Manuel, Strous, Marc, Hawley, Alyse K.

“…Cyanobacteria encompass a diverse group of photoautotrophic bacteria with important roles in nature and biotechnology. Here we characterized Candidatus…”
Get full text

A compendium of multi-omic sequence information from the Saanich Inlet water column by Hawley, Alyse K., Torres-Beltrán, Mónica, Zaikova, Elena, Walsh, David A., Mueller, Andreas, Scofield, Melanie, Kheirandish, Sam, Payne, Chris, Pakhomova, Larysa, Bhatia, Maya, Shevchuk, Olena, Gies, Esther A., Fairley, Diane, Malfatti, Stephanie A., Norbeck, Angela D., Brewer, Heather M., Pasa-Tolic, Ljiljana, del Rio, Tijana Glavina, Suttle, Curtis A., Tringe, Susannah, Hallam, Steven J.

“…Marine oxygen minimum zones (OMZs) are widespread regions of the ocean that are currently expanding due to global warming. While inhospitable to most…”
Get full text

Methanotrophic Community Dynamics in a Seasonally Anoxic Fjord: Saanich Inlet, British Columbia by Torres-Beltrán, Mónica, Hawley, Alyse K., Capelle, David W., Bhatia, Maya P., Evan Durno, W., Tortell, Philippe D., Hallam, Steven J.

“…Marine oxygen minimum zones (OMZs) play disproportionate roles in nutrient and climate active trace gas cycling including nitrous oxide and methane, in the…”
Get full text

Effect of bodily fluids from honey bee (Apis mellifera) larvae on growth and genome-wide transcriptional response of the causal agent of American Foulbrood disease (Paenibacillus larvae) by De Smet, Lina, De Koker, Dieter, Hawley, Alyse K, Foster, Leonard J, De Vos, Paul, de Graaf, Dirk C

“…Paenibacillus larvae, the causal agent of American Foulbrood disease (AFB), affects honey bee health worldwide. The present study investigates the effect of…”
Get full text

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone by Louca, Stilianos, Hawley, Alyse K., Katsev, Sergei, Torres-Beltran, Monica, Bhatia, Maya P., Kheirandish, Sam, Michiels, Céline C., Capelle, David, Lavik, Gaute, Doebeli, Michael, Crowe, Sean A., Hallam, Steven J.

“…Microorganisms are the most abundant lifeform on Earth, mediating global fluxes of matter and energy. Over the past decade, high-throughput molecular…”
Get full text

Metabolic pathways for the whole community by Hanson, Niels W, Konwar, Kishori M, Hawley, Alyse K, Altman, Tomer, Karp, Peter D, Hallam, Steven J

“…A convergence of high-throughput sequencing and computational power is transforming biology into information science. Despite these technological advances,…”
Get full text

Monitoring microbial responses to ocean deoxygenation in a model oxygen minimum zone by Hallam, Steven J., Torres-Beltrán, Mónica, Hawley, Alyse K.

“…Today in Scientific Data, two compendia of geochemical and multi-omic sequence information (DNA, RNA, protein) generated over almost a decade of time series…”
Get full text

Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean by Cavaco, Maria A., Bhatia, Maya P., Hawley, Alyse K., Torres-Beltrán, Monica, Johnson, Winifred M., Longnecker, Krista, Konwar, Kishori, Kujawinski, Elizabeth B., Hallam, Steven J.

“…Microbial communities play integral roles in driving nutrient and energy transformations in the ocean, collectively contributing to fundamental biogeochemical…”
Get full text

A compendium of geochemical information from the Saanich Inlet water column by Torres-Beltrán, Mónica, Hawley, Alyse K., Capelle, David, Zaikova, Elena, Walsh, David A., Mueller, Andreas, Scofield, Melanie, Payne, Chris, Pakhomova, Larysa, Kheirandish, Sam, Finke, Jan, Bhatia, Maya, Shevchuk, Olena, Gies, Esther A., Fairley, Diane, Michiels, Céline, Suttle, Curtis A., Whitney, Frank, Crowe, Sean A., Tortell, Philippe D., Hallam, Steven J.

“…Extensive and expanding oxygen minimum zones (OMZs) exist at variable depths in coastal and open ocean waters. As oxygen levels decline, nutrients and energy…”
Get full text

Author Correction: A compendium of geochemical information from the Saanich Inlet water column by Torres-Beltrán, Mónica, Hawley, Alyse K., Capelle, David, Zaikova, Elena, Walsh, David A., Mueller, Andreas, Scofield, Melanie, Payne, Chris, Pakhomova, Larysa, Kheirandish, Sam, Finke, Jan, Bhatia, Maya, Shevchuk, Olena, Gies, Esther A., Fairley, Diane, Michiels, Céline, Suttle, Curtis A., Whitney, Frank, Crowe, Sean A., Tortell, Philippe D., Hallam, Steven J.

“…In Table 3 of this Data Descriptor the units of Mean_N2O and Mean_CH4 are incorrectly stated as “Nanomolar (μM)”. This should instead read “Nanomolar (nM)”…”
Get full text

A multi-year time-series of N₂O dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia by Capelle, David W., Hawley, Alyse K., Hallam, Steven J., Tortell, Philippe D.

“…We present an 8-yr time-series of monthly water column N₂O measurements from Saanich Inlet, a seasonally anoxic fjord in southern British Columbia. We document…”
Get full text

Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters by Hawley, Alyse K, Kheirandish, Sam, Mueller, Andreas, Leung, Hilary T C, Norbeck, Angela D, Brewer, Heather M, Pasa-Tolic, Ljiljana, Hallam, Steven J

“…Water column oxygen (O2)-deficiency shapes food-web structure by progressively directing nutrients and energy away from higher trophic levels into microbial…”
Get more information

A multi‐year time‐series of N 2 O dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia by Capelle, David W., Hawley, Alyse K., Hallam, Steven J., Tortell, Philippe D.

“…We present an 8‐yr time‐series of monthly water column N 2 O measurements from Saanich Inlet, a seasonally anoxic fjord in southern British Columbia. We…”
Get full text

Effect of Bodily Fluids from Honey Bee by De Smet, Lina, De Koker, Dieter, Hawley, Alyse K, Foster, Leonard J, De Vos, Paul, de Graaf, Dirk C

“…Paenibacillus larvae, the causal agent of American Foulbrood disease (AFB), affects honey bee health worldwide. The present study investigates the effect of…”
Get full text