Search Results - "Haudenschild, Christian D."

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning by Cokus, Shawn J, Feng, Suhua, Zhang, Xiaoyu, Chen, Zugen, Merriman, Barry, Haudenschild,Christian D, Pradhan, Sriharsa, Nelson, Stanley F, Pellegrini, Matteo, Jacobsen, Steven E

“…Cytosine DNA methylation is important in regulating gene expression and in silencing transposons and other repetitive sequences. Recent genomic studies in…”
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Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals by Battle, Alexis, Mostafavi, Sara, Zhu, Xiaowei, Potash, James B, Weissman, Myrna M, McCormick, Courtney, Haudenschild, Christian D, Beckman, Kenneth B, Shi, Jianxin, Mei, Rui, Urban, Alexander E, Montgomery, Stephen B, Levinson, Douglas F, Koller, Daphne

“…Understanding the consequences of regulatory variation in the human genome remains a major challenge, with important implications for understanding gene…”
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Elucidation of the Small RNA Component of the Transcriptome by Lu, Cheng, Tej, Shivakundan Singh, Luo, Shujun, Haudenschild, Christian D, Meyers, Blake C, Green, Pamela J

“…Small RNAs play important regulatory roles in most eukaryotes, but only a small proportion of these molecules have been identified. We sequenced more than two…”
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Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas) by Hedgecock, Dennis, Lin, Jing-Zhong, DeCola, Shannon, Haudenschild, Christian D, Meyer, Eli, Manahan, Donal T, Bowen, Ben

“…Compared with understanding of biological shape and form, knowledge is sparse regarding what regulates growth and body size of a species. For example, the…”
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The use of MPSS for whole-genome transcriptional analysis in Arabidopsis by Meyers, Blake C, Tej, Shivakundan Singh, Vu, Tam H, Haudenschild, Christian D, Agrawal, Vikas, Edberg, Steve B, Ghazal, Hassan, Decola, Shannon

“…We have generated 36,991,173 17-base sequence "signatures" representing transcripts from the model plant Arabidopsis. These data were derived by massively…”
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Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells by Roach, Jared C, Smith, Kelly D, Strobe, Katie L, Nissen, Stephanie M, Haudenschild, Christian D, Zhou, Daixing, Vasicek, Thomas J, Held, G.A, Stolovitzky, Gustavo A, Hood, Leroy E, Aderem, Alan

“…Transcription factors play a key role in integrating and modulating biological information. In this study, we comprehensively measured the changing abundances…”
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Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods by Gowda, Malali, Venu, R C, Raghupathy, Mohan B, Nobuta, Kan, Li, Huameng, Wing, Rod, Stahlberg, Eric, Couglan, Sean, Haudenschild, Christian D, Dean, Ralph, Nahm, Baek-Hie, Meyers, Blake C, Wang, Guo-Liang

“…Rice blast, caused by the fungal pathogen Magnaporthe grisea, is a devastating disease causing tremendous yield loss in rice production. The public…”
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BAP1 loss defines a new class of renal cell carcinoma by Peña-Llopis, Samuel, Vega-Rubín-de-Celis, Silvia, Liao, Arnold, Leng, Nan, Pavía-Jiménez, Andrea, Wang, Shanshan, Yamasaki, Toshinari, Zhrebker, Leah, Sivanand, Sharanya, Spence, Patrick, Kinch, Lisa, Hambuch, Tina, Jain, Suneer, Lotan, Yair, Margulis, Vitaly, Sagalowsky, Arthur I, Summerour, Pia Banerji, Kabbani, Wareef, Wong, S W Wendy, Grishin, Nick, Laurent, Marc, Xie, Xian-Jin, Haudenschild, Christian D, Ross, Mark T, Bentley, David R, Kapur, Payal, Brugarolas, James

“…James Brugarolas and colleagues identify recurrent BAP1 mutations in clear cell renal cell carcinoma (ccRCC). They show that BAP1 binds to HCF-1 and suppresses…”
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SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries by Van Tassell, Curtis P, Smith, Timothy P.L, Matukumalli, Lakshmi K, Taylor, Jeremy F, Schnabel, Robert D, Lawley, Cynthia Taylor, Haudenschild, Christian D, Moore, Stephen S, Warren, Wesley C, Sonstegard, Tad S

“…High-density single-nucleotide polymorphism (SNP) arrays have revolutionized the ability of genome-wide association studies to detect genomic regions harboring…”
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atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation by Harhay, Gregory P, Smith, Timothy P.L, Alexander, Leeson J, Haudenschild, Christian D, Keele, John W, Matukumalli, Lakshmi K, Schroeder, Steven G, Van Tassell, Curtis P, Gresham, Cathy R, Bridges, Susan M, Burgess, Shane C, Sonstegard, Tad S

“…Background: A comprehensive transcriptome survey, or gene atlas, provides information essential for a complete understanding of the genomic biology of an…”
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Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing by Meyers, B.C, Vu, T.H, Tej, S.S, Ghazal, H, Matvienko, M, Agrawal, V, Ning, J.C, Haudenschild, C.D

“…Large-scale sequencing of short mRNA-derived tags can establish the qualitative and quantitative characteristics of a complex transcriptome. We sequenced…”
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An atlas of human gene expression from massively parallel signature sequencing (MPSS) by Jongeneel, C Victor, Delorenzi, Mauro, Iseli, Christian, Zhou, Daixing, Haudenschild, Christian D, Khrebtukova, Irina, Kuznetsov, Dmitry, Stevenson, Brian J, Strausberg, Robert L, Simpson, Andrew J G, Vasicek, Thomas J

“…We have used massively parallel signature sequencing (MPSS) to sample the transcriptomes of 32 normal human tissues to an unprecedented depth, thus documenting…”
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Use of massively parallel signature sequencing to study genes expressed during the plant defense response by Meyers, Blake C, Haudenschild, Christian D, Vemaraju, Kalyan

“…Massively parallel signature sequencing is a sequencing-based method that provides quantitative gene expression data for nearly all transcripts in a particular…”
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Massively parallel signature sequencing by Zhou, Daixing, Rao, Mahendra S, Walker, Roger, Khrebtukova, Irina, Haudenschild, Christian D, Miura, Takumi, Decola, Shannon, Vermaas, Eric, Moon, Keith, Vasicek, Thomas J

“…Massively parallel signature sequencing is an ultra-high throughput sequencing technology. It can simultaneously sequence millions of sequence tags, and,…”
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A comprehensive catalogue of somatic mutations from a human cancer genome by Teague, Jon, Menzies, Andrew, Ye, Kai, Bauer, Markus J, Mudie, Laura J, Alipaz, Julie, Chen, Lina, Stratton, Michael R, Stebbings, Lucy A, McBride, David J, Gormley, Niall A, Ordóñez, Gonzalo R, Haudenschild, Christian D, Royce, Tom, Carter, Richard J, Schulz-Trieglaff, Ole B, Hims, Matthew M, Kokko-Gonzales, Paula I, Leroy, Catherine, Bentley, David R, Spiridou, Anastassia, Beare, David, Jia, Mingming, Williamson, David, Edkins, Sarah, Grocock, Russell J, Varela, Ignacio, Bignell, Graham R, Lin, Meng-Lay, Pleasance, Erin D, Stephens, Philip J, Szajkowski, Lukasz, Futreal, P. Andrew, Marshall, John, Chin, Lynda, Cox, Anthony J, James, Terena, Greenman, Chris D, Butler, Adam, Ross, Mark T, Campbell, Peter J, Ning, Zemin, Humphray, Sean J, Kingsbury, Zoya, Cheetham, R. Keira

“…All cancers carry somatic mutations. A subset of these somatic alterations, termed driver mutations, confer selective growth advantage and are implicated in…”
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Erratum: BAP1 loss defines a new class of renal cell carcinoma by Peña-Llopis, Samuel, Vega-Rubín-de-Celis, Silvia, Liao, Arnold, Leng, Nan, Pavía-Jiménez, Andrea, Wang, Shanshan, Yamasaki, Toshinari, Zhrebker, Leah, Sivanand, Sharanya, Spence, Patrick, Kinch, Lisa, Hambuch, Tina, Jain, Suneer, Lotan, Yair, Margulis, Vitaly, Sagalowsky, Arthur I, Summerour, Pia Banerji, Kabbani, Wareef, Wong, S W Wendy, Grishin, Nick, Laurent, Marc, Xie, Xian-Jin, Haudenschild, Christian D, Ross, Mark T, Bentley, David R, Kapur, Payal, Brugarolas, James

“…Nat. Genet. 44, 751–759 (2012); published online 10 June 2012; corrected after print 21 June 2012 In the version of this article initially published, the P…”
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BAP 1 loss defines a new class of renal cell carcinoma by PENA-LLOPIS, Samuel, VEGA-RUBIN-DE-CELIS, Silvia, KINCH, Lisa, HAMBUCH, Tina, JAIN, Suneer, LOTAN, Yair, MARGULIS, Vitaly, SAGALOWSKY, Arthur I, SUMMEROUR, Pia Banerji, KABBANI, Wareef, WENDY WONG, S. W, GRISHIN, Nick, LIAO, Arnold, LAURENT, Marc, XIE, Xian-Jin, HAUDENSCHILD, Christian D, ROSS, Mark T, BENTLEY, David R, KAPUR, Payal, BRUGAROLAS, James, NAN LENG, FAVIA-JIMENEZ, Andrea, SHANSHAN WANG, YAMASAKI, Toshinari, ZHREBKER, Leah, SIVANAND, Sharanya, SPENCE, Patrick

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Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning by Cokus, Shawn J., Feng, Suhua, Zhang, Xiaoyu, Chen, Zugen, Merriman, Barry, Haudenschild, Christian D., Pradhan, Sriharsa, Nelson, Stanley F., Pellegrini, Matteo, Jacobsen, Steven E.

“…Cytosine DNA methylation is important in regulating gene expression and in silencing transposons and other repetitive sequences 1 , 2 . Recent genomic studies…”
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Molecular engineering of monoterpene production by Haudenschild, C D, Croteau, R B

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