Search Results - "Hattab, Georges"
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Mushroom data creation, curation, and simulation to support classification tasks
Published in Scientific reports (14-04-2021)“…Predicting if a set of mushrooms is edible or not corresponds to the task of classifying them into two groups—edible or poisonous—on the basis of a…”
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Ten simple rules to colorize biological data visualization
Published in PLoS computational biology (15-10-2020)“…The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. [...]quantitative data (interval…”
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Investigating the utility of VR for spatial understanding in surgical planning: evaluation of head-mounted to desktop display
Published in Scientific reports (29-06-2021)“…Recent technological advances have made Virtual Reality (VR) attractive in both research and real world applications such as training, rehabilitation, and…”
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4
A theoretical basis for bioindication in complex ecosystems
Published in Ecological indicators (01-07-2022)“…•Develops a abstract but actionable theory of how ecological bioindicators function.•Draws from information theory, semiotics, and complex systems…”
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Correction: Ten simple rules to colorize biological data visualization
Published in PLoS computational biology (06-04-2021)“…[This corrects the article DOI: 10.1371/journal.pcbi.1008259.]…”
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Uniaxial compression testing and Cauchy stress modeling to design anatomical silicone replicas
Published in Scientific reports (16-07-2020)“…Anatomically realistic organ replicas or phantoms allow for accurate studies and reproducible research. To recreate a human kidney, mimicry of the elastic…”
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7
Design considerations for advancing data storage with synthetic DNA for long-term archiving
Published in Materials today bio (01-06-2022)“…Deoxyribonucleic acid (DNA) is increasingly emerging as a serious medium for long-term archival data storage because of its remarkable high-capacity,…”
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Context-Aware Phylogenetic Trees for Phylogeny-Based Taxonomy Visualization
Published in Frontiers in genetics (18-05-2022)“…Sustained efforts in next-generation sequencing technologies are changing the field of taxonomy. The increase in the number of resolved genomes has made the…”
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DNAsmart: Multiple attribute ranking tool for DNA data storage systems
Published in Computational and structural biotechnology journal (01-01-2023)“…In an ever-growing need for data storage capacity, the Deoxyribonucleic Acid (DNA) molecule gains traction as a new storage medium with a larger capacity,…”
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Interpretable molecular encodings and representations for machine learning tasks
Published in Computational and structural biotechnology journal (01-12-2024)“…Molecular encodings and their usage in machine learning models have demonstrated significant breakthroughs in biomedical applications, particularly in the…”
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11
A nested model for AI design and validation
Published in iScience (20-09-2024)“…The growing AI field faces trust, transparency, fairness, and discrimination challenges. Despite the need for new regulations, there is a mismatch between…”
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MOVIS: A multi-omics software solution for multi-modal time-series clustering, embedding, and visualizing tasks
Published in Computational and structural biotechnology journal (01-01-2022)“…[Display omitted] Thanks to recent advances in sequencing and computational technologies, many researchers with biological and/or medical backgrounds are now…”
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The visual story of data storage: From storage properties to user interfaces
Published in Computational and structural biotechnology journal (01-01-2021)“…About fifty times more data has been created than there are stars in the observable universe. Current trends in data creation and consumption mean that the…”
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Towards improving edge quality using combinatorial optimization and a novel skeletonize algorithm
Published in BMC medical imaging (05-08-2021)“…Object detection and image segmentation of regions of interest provide the foundation for numerous pipelines across disciplines. Robust and accurate computer…”
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A case study: impact of target surface mesh size and mesh quality on volume-to-surface registration performance in hepatic soft tissue navigation
Published in International journal for computer assisted radiology and surgery (01-08-2020)“…Purpose Soft tissue deformation severely impacts the registration of pre- and intra-operative image data during computer-assisted navigation in laparoscopic…”
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CORDITE: The Curated CORona Drug InTERactions Database for SARS-CoV-2
Published in iScience (24-07-2020)“…Since the outbreak in 2019, researchers are trying to find effective drugs against the SARS-CoV-2 virus based on de novo drug design and drug repurposing. The…”
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MOSGA 2: Comparative genomics and validation tools
Published in Computational and structural biotechnology journal (01-01-2021)“…[Display omitted] Due to the highly growing number of available genomic information, the need for accessible and easy-to-use analysis tools is increasing. To…”
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A Novel Methodology for Characterizing Cell Subpopulations in Automated Time-lapse Microscopy
Published in Frontiers in bioengineering and biotechnology (28-02-2018)“…Time-lapse imaging of cell colonies in microfluidic chambers provides time series of bioimages, i.e., biomovies. They show the behavior of cells over time…”
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ViCAR: An Adaptive and Landmark-Free Registration of Time Lapse Image Data from Microfluidics Experiments
Published in Frontiers in genetics (31-05-2017)“…In order to understand gene function in bacterial life cycles, time lapse bioimaging is applied in combination with different marker protocols in so called…”
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Interactive polar diagrams for model comparison
Published in Computer methods and programs in biomedicine (01-12-2023)“…Evaluating the performance of multiple complex models, such as those found in biology, medicine, climatology, and machine learning, using conventional…”
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