Search Results - "Hatos, András"

MobiDB: intrinsically disordered proteins in 2021 by Piovesan, Damiano, Necci, Marco, Escobedo, Nahuel, Monzon, Alexander Miguel, Hatos, András, Mičetić, Ivan, Quaglia, Federica, Paladin, Lisanna, Ramasamy, Pathmanaban, Dosztányi, Zsuzsanna, Vranken, Wim F, Davey, Norman E, Parisi, Gustavo, Fuxreiter, Monika, Tosatto, Silvio C E

“…Abstract The MobiDB database (URL: https://mobidb.org/) provides predictions and annotations for intrinsically disordered proteins. Here, we report recent…”
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PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins by Lazar, Tamas, Martínez-Pérez, Elizabeth, Quaglia, Federica, Hatos, András, Chemes, Lucía B, Iserte, Javier A, Méndez, Nicolás A, Garrone, Nicolás A, Saldaño, Tadeo E, Marchetti, Julia, Rueda, Ana Julia Velez, Bernadó, Pau, Blackledge, Martin, Cordeiro, Tiago N, Fagerberg, Eric, Forman-Kay, Julie D, Fornasari, Maria S, Gibson, Toby J, Gomes, Gregory-Neal W, Gradinaru, Claudiu C, Head-Gordon, Teresa, Jensen, Malene Ringkjøbing, Lemke, Edward A, Longhi, Sonia, Marino-Buslje, Cristina, Minervini, Giovanni, Mittag, Tanja, Monzon, Alexander Miguel, Pappu, Rohit V, Parisi, Gustavo, Ricard-Blum, Sylvie, Ruff, Kiersten M, Salladini, Edoardo, Skepö, Marie, Svergun, Dmitri, Vallet, Sylvain D, Varadi, Mihaly, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano

“…Abstract The Protein Ensemble Database (PED) (https://proteinensemble.org), which holds structural ensembles of intrinsically disordered proteins (IDPs), has…”
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DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J, Aspromonte, Maria Cristina, Davey, Norman E, Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V, Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B, Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D, Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N, Dunker, A Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C E

“…The Database of Protein Disorder (DisProt, URL: www.disprot.org) has been significantly updated and upgraded since its last major renewal in 2007. The current…”
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Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions by Mészáros, Bálint, Hatos, András, Palopoli, Nicolas, Quaglia, Federica, Salladini, Edoardo, Van Roey, Kim, Arthanari, Haribabu, Dosztányi, Zsuzsanna, Felli, Isabella C., Fischer, Patrick D., Hoch, Jeffrey C., Jeffries, Cy M., Longhi, Sonia, Maiani, Emiliano, Orchard, Sandra, Pancsa, Rita, Papaleo, Elena, Pierattelli, Roberta, Piovesan, Damiano, Pritisanac, Iva, Tenorio, Luiggi, Viennet, Thibault, Tompa, Peter, Vranken, Wim, Tosatto, Silvio C. E., Davey, Norman E.

“…An unambiguous description of an experiment, and the subsequent biological observation, is vital for accurate data interpretation. Minimum information…”
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APICURON: a database to credit and acknowledge the work of biocurators by Hatos, András, Quaglia, Federica, Piovesan, Damiano, Tosatto, Silvio C E

“…APICURON is an open and freely accessible resource that tracks and credits the work of biocurators across multiple participating knowledgebases. Biocuration is…”
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Assessing predictors for new post translational modification sites: A case study on hydroxylation by Piovesan, Damiano, Hatos, Andras, Minervini, Giovanni, Quaglia, Federica, Monzon, Alexander Miguel, Tosatto, Silvio C.E

“…Post-translational modification (PTM) sites have become popular for predictor development. However, with the exception of phosphorylation and a handful of…”
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DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J., Aspromonte, Maria Cristina, Davey, Norman E., Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V., Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B., Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D., Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N., Dunker, A. Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C.E.

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Exploring Protein Intrinsic Disorder with MobiDB by Monzon, Alexander Miguel, Hatos, András, Necci, Marco, Piovesan, Damiano, Tosatto, Silvio C E

“…Nowadays, it is well established that many proteins or regions under physiological conditions lack a fixed three-dimensional structure and are intrinsically…”
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Corrigendum: DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J, Aspromonte, Maria Cristina, Davey, Norman E, Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V, Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B, Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D, Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N, Dunker, A Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C E

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PED in 2021: a major update of the protein ensembledatabase for intrinsically disordered proteins by Lazar, Tamas, Martínez-Pérez, Elizabeth, Quaglia, Federica, Hatos, András, Chemes, Lucía B, Iserte, Javier A, Méndez, Nicolás A, Garrone, Nicolás A, Saldaño, Tadeo E, Marchetti, Julia, Velez Rueda, Ana Julia, Bernadó, Pau, Blackledge, Martin, Cordeiro, Tiago N, Fagerberg, Eric, Forman-Kay, Julie D, Fornasari, Maria S, Gibson, Toby J, Gomes, Gregory-Neal W, Gradinaru, Claudiu C, Head-Gordon, Teresa, Ringkjøbing Jensen, Malene, Lemke, Edward A, Longhi, Sonia, Marino-Buslje, Cristina, Minervini, Giovanni, Mittag, Tanja, Monzon, Alexander Miguel, Pappu, Rohit V, Parisi, Gustavo, Ricard-Blum, Sylvie, Ruff, Kiersten M, Salladini, Edoardo, Skepö, Marie, Svergun, Dmitri, Vallet, Sylvain D, Varadi, Mihaly, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano, Ugalde, Rodolfo A

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FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid–liquid phase separation and aggregation of proteins by Hatos, Andras, Tosatto, Silvio C E, Vendruscolo, Michele, Fuxreiter, Monika

“…Abstract Many proteins perform their functions within membraneless organelles, where they form a liquid-like condensed state, also known as droplet state. The…”
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FuzDB: a new phase in understanding fuzzy interactions by Hatos, Andras, Monzon, Alexander Miguel, Tosatto, Silvio C E, Piovesan, Damiano, Fuxreiter, Monika

“…Abstract Fuzzy interactions are specific, variable contacts between proteins and other biomolecules (proteins, DNA, RNA, small molecules) formed in accord to…”
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DisProt: intrinsic protein disorder annotation in 2020 by Hatos, András, Hajdu-Soltész, Borbála, Monzon, Alexander M, Palopoli, Nicolas, Álvarez, Lucía, Aykac-Fas, Burcu, Bassot, Claudio, Benítez, Guillermo I, Bevilacqua, Martina, Chasapi, Anastasia, Chemes, Lucia, Davey, Norman E, Davidović, Radoslav, Dunker, A Keith, Elofsson, Arne, Gobeill, Julien, Foutel, Nicolás S González, Sudha, Govindarajan, Guharoy, Mainak, Horvath, Tamas, Iglesias, Valentin, Kajava, Andrey V, Kovacs, Orsolya P, Lamb, John, Lambrughi, Matteo, Lazar, Tamas, Leclercq, Jeremy Y, Leonardi, Emanuela, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Maiani, Emiliano, Manso, José A, Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Mészáros, Bálint, Mičetić, Ivan, Minervini, Giovanni, Murvai, Nikoletta, Necci, Marco, Ouzounis, Christos A, Pajkos, Mátyás, Paladin, Lisanna, Pancsa, Rita, Papaleo, Elena, Parisi, Gustavo, Pasche, Emilie, Barbosa Pereira, Pedro J, Promponas, Vasilis J, Pujols, Jordi, Quaglia, Federica, Ruch, Patrick, Salvatore, Marco, Schad, Eva, Szabo, Beata, Szaniszló, Tamás, Tamana, Stella, Tantos, Agnes, Veljkovic, Nevena, Ventura, Salvador, Vranken, Wim, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano

“…Abstract The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from…”
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DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation by Quaglia, Federica, Mészáros, Bálint, Salladini, Edoardo, Hatos, András, Pancsa, Rita, Chemes, Lucía B, Pajkos, Mátyás, Lazar, Tamas, Peña-Díaz, Samuel, Santos, Jaime, Ács, Veronika, Farahi, Nazanin, Fichó, Erzsébet, Aspromonte, Maria Cristina, Bassot, Claudio, Chasapi, Anastasia, Davey, Norman E, Davidović, Radoslav, Dobson, Laszlo, Elofsson, Arne, Erdős, Gábor, Gaudet, Pascale, Giglio, Michelle, Glavina, Juliana, Iserte, Javier, Iglesias, Valentín, Kálmán, Zsófia, Lambrughi, Matteo, Leonardi, Emanuela, Longhi, Sonia, Macedo-Ribeiro, Sandra, Maiani, Emiliano, Marchetti, Julia, Marino-Buslje, Cristina, Mészáros, Attila, Monzon, Alexander Miguel, Minervini, Giovanni, Nadendla, Suvarna, Nilsson, Juliet F, Novotný, Marian, Ouzounis, Christos A, Palopoli, Nicolás, Papaleo, Elena, Pereira, Pedro José Barbosa, Pozzati, Gabriele, Promponas, Vasilis J, Pujols, Jordi, Rocha, Alma Carolina Sanchez, Salas, Martin, Sawicki, Luciana Rodriguez, Schad, Eva, Shenoy, Aditi, Szaniszló, Tamás, Tsirigos, Konstantinos D, Veljkovic, Nevena, Parisi, Gustavo, Ventura, Salvador, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano

“…Abstract The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of…”
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FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins by Hatos, Andras, Teixeira, João M C, Barrera-Vilarmau, Susana, Horvath, Attila, Tosatto, Silvio C E, Vendruscolo, Michele, Fuxreiter, Monika

“…Abstract Proteins form complex interactions in the cellular environment to carry out their functions. They exhibit a wide range of binding modes depending on…”
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DOME Registry: Implementing community-wide recommendations for reporting supervised machine learning in biology by Attafi, Omar Abdelghani, Clementel, Damiano, Kyritsis, Konstantinos, Capriotti, Emidio, Farrell, Gavin, Fragkouli, Styliani-Christina, Castro, Leyla Jael, Hatos, András, Lenaerts, Tom, Mazurenko, Stanislav, Mozaffari, Soroush, Pradelli, Franco, Ruch, Patrick, Savojardo, Castrense, Turina, Paola, Zambelli, Federico, Piovesan, Damiano, Monzon, Alexander Miguel, Psomopoulos, Fotis, Tosatto, Silvio C. E

“…Supervised machine learning (ML) is used extensively in biology and deserves closer scrutiny. The DOME recommendations aim to enhance the validation and…”
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3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources by Varadi, Mihaly, Nair, Sreenath, Sillitoe, Ian, Tauriello, Gerardo, Anyango, Stephen, Bienert, Stefan, Borges, Clemente, Deshpande, Mandar, Green, Tim, Hassabis, Demis, Hatos, Andras, Hegedus, Tamas, Hekkelman, Maarten L, Joosten, Robbie, Jumper, John, Laydon, Agata, Molodenskiy, Dmitry, Piovesan, Damiano, Salladini, Edoardo, Salzberg, Steven L, Sommer, Markus J, Steinegger, Martin, Suhajda, Erzsebet, Svergun, Dmitri, Tenorio-Ku, Luiggi, Tosatto, Silvio, Tunyasuvunakool, Kathryn, Waterhouse, Andrew Mark, Žídek, Augustin, Schwede, Torsten, Orengo, Christine, Velankar, Sameer

“…Abstract While scientists can often infer the biological function of proteins from their 3-dimensional quaternary structures, the gap between the number of…”
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