Search Results - "Hatmal, Mamon"
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Combining Stochastic Deformation/Relaxation and Intermolecular Contacts Analysis for Extracting Pharmacophores from Ligand–Receptor Complexes
Published in Journal of chemical information and modeling (23-04-2018)“…We previously combined molecular dynamics (classical or simulated annealing) with ligand–receptor contacts analysis as a means to extract valid pharmacophore…”
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Discovery of new STAT3 inhibitors as anticancer agents using ligand-receptor contact fingerprints and docking-augmented machine learning
Published in RSC advances (31-01-2023)“…STAT3 belongs to a family of seven vital transcription factors. High levels of STAT3 are detected in several types of cancer. Hence, STAT3 inhibition is…”
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3
Selection and targeting of EpCAM protein by ssDNA aptamer
Published in PloS one (15-12-2017)“…Aptamers are molecules that reveal highly complex and refined molecular recognition properties. These molecules are capable of binding with high affinity and…”
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Antiviral and Immunomodulatory Effects of Phytochemicals from Honey against COVID-19: Potential Mechanisms of Action and Future Directions
Published in Molecules (Basel, Switzerland) (01-11-2020)“…The new coronavirus disease (COVID-19), caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), has recently put the world under stress,…”
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Correction: Selection and targeting of EpCAM protein by ssDNA aptamer
Published in PloS one (14-03-2018)“…[This corrects the article DOI: 10.1371/journal.pone.0189558.]…”
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siRNA: Mechanism of action, challenges, and therapeutic approaches
Published in European journal of pharmacology (15-08-2021)“…Owing to specific and compelling gene silencing, RNA interference (RNAi) is expected to become an essential approach in treating a variety of infectious,…”
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Side Effects and Perceptions Following COVID-19 Vaccination in Jordan: A Randomized, Cross-Sectional Study Implementing Machine Learning for Predicting Severity of Side Effects
Published in Vaccines (Basel) (26-05-2021)“…Background: Since the coronavirus disease 2019 (COVID-19) was declared a pandemic, there was no doubt that vaccination is the ideal protocol to tackle it…”
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Comprehensive Structural and Molecular Comparison of Spike Proteins of SARS-CoV-2, SARS-CoV and MERS-CoV, and Their Interactions with ACE2
Published in Cells (Basel, Switzerland) (08-12-2020)“…The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has recently emerged in China and caused a disease called coronavirus disease 2019 (COVID-19)…”
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Exploiting activity cliffs for building pharmacophore models and comparison with other pharmacophore generation methods: sphingosine kinase 1 as case study
Published in Journal of computer-aided molecular design (2022)“…Activity cliffs (ACs) are defined as closely analogous compounds of significant affinity discrepancies against certain biotarget. In this paper we propose to…”
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10
The Emerging Role of Heat Shock Factor 1 (HSF1) and Heat Shock Proteins (HSPs) in Ferroptosis
Published in Pathophysiology (Amsterdam) (14-03-2023)“…Cells employ a well-preserved physiological stress response mechanism, termed the heat shock response, to activate a certain type of molecular chaperone called…”
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Downregulation of STAT3, β-Catenin, and Notch-1 by Single and Combinations of siRNA Treatment Enhance Chemosensitivity of Wild Type and Doxorubicin Resistant MCF7 Breast Cancer Cells to Doxorubicin
Published in International journal of molecular sciences (28-07-2019)“…Combinatorial therapeutic strategies using siRNA and small molecules to eradicate tumors are emerging. Targeting multiple signaling pathways decreases the…”
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12
Comprehensive literature review of monkeypox
Published in Emerging microbes & infections (01-12-2022)“…The current outbreak of monkeypox (MPX) infection has emerged as a global matter of concern in the last few months. MPX is a zoonosis caused by the MPX virus…”
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13
Investigating the association of CD36 gene polymorphisms (rs1761667 and rs1527483) with T2DM and dyslipidemia: Statistical analysis, machine learning based prediction, and meta-analysis
Published in PloS one (14-10-2021)“…CD36 (cluster of differentiation 36) is a membrane protein involved in lipid metabolism and has been linked to pathological conditions associated with…”
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COVID-19 Vaccine Acceptance among Vulnerable Groups: Syrian Refugees in Jordan
Published in Vaccines (Basel) (28-09-2022)“…Despite the wide distribution of COVID-19 vaccines, refugees remain last in line for the intake of vaccines. Syrian refugees in Jordan reach up to 700,000…”
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Reported Adverse Effects and Attitudes among Arab Populations Following COVID-19 Vaccination: A Large-Scale Multinational Study Implementing Machine Learning Tools in Predicting Post-Vaccination Adverse Effects Based on Predisposing Factors
Published in Vaccines (Basel) (26-02-2022)“…Background: The unprecedented global spread of coronavirus disease 2019 (COVID-19) has imposed huge challenges on the healthcare facilities, and impacted every…”
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Vitamin B12 insufficiency and deficiency: a review of nondisease risk factors
Published in Scandinavian journal of clinical and laboratory investigation (01-12-2023)“…Vitamin B12 deficiency and insufficiency can lead to both hematological and neurological impairments. This review examines nondisease causes and risk factors…”
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Common and Potential Emerging Foodborne Viruses: A Comprehensive Review
Published in Life (Basel, Switzerland) (01-01-2024)“…Human viruses and viruses from animals can cause illnesses in humans after the consumption of contaminated food or water. Contamination may occur during…”
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Exploring the influence of culture conditions on kefir's anticancer properties
Published in Journal of dairy science (01-05-2018)“…Cancer is a major health problem in many parts of the world. Conventional anticancer treatments are painful, expensive, and unsafe. Therefore, demand is…”
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Vitamin B12 binding to mutated human transcobalamin, in-silico study of TCN2 alanine scanning and ClinVar missense mutations/SNPs
Published in Journal of biomolecular structure & dynamics (24-05-2023)“…Many missense mutations/SNPs of the TCN2 gene (which yield Transcobalamin (TC)) were reported in the literature but no study is available about their effect on…”
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Discovery of new Cdc2-like kinase 4 (CLK4) inhibitors via pharmacophore exploration combined with flexible docking-based ligand/receptor contact fingerprints and machine learning
Published in RSC advances (31-03-2022)“…Cdc2-like kinase 4 (CLK4) inhibitors are of potential therapeutic value in many diseases particularly cancer. In this study, we combined extensive ligand-based…”
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