Search Results - "Hatmal, Ma’mon M."
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siRNA: Mechanism of action, challenges, and therapeutic approaches
Published in European journal of pharmacology (15-08-2021)“…Owing to specific and compelling gene silencing, RNA interference (RNAi) is expected to become an essential approach in treating a variety of infectious,…”
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Exploiting activity cliffs for building pharmacophore models and comparison with other pharmacophore generation methods: sphingosine kinase 1 as case study
Published in Journal of computer-aided molecular design (2022)“…Activity cliffs (ACs) are defined as closely analogous compounds of significant affinity discrepancies against certain biotarget. In this paper we propose to…”
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3
Vitamin B12 insufficiency and deficiency: a review of nondisease risk factors
Published in Scandinavian journal of clinical and laboratory investigation (01-12-2023)“…Vitamin B12 deficiency and insufficiency can lead to both hematological and neurological impairments. This review examines nondisease causes and risk factors…”
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Vitamin B12 binding to mutated human transcobalamin, in-silico study of TCN2 alanine scanning and ClinVar missense mutations/SNPs
Published in Journal of biomolecular structure & dynamics (24-05-2023)“…Many missense mutations/SNPs of the TCN2 gene (which yield Transcobalamin (TC)) were reported in the literature but no study is available about their effect on…”
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Combining molecular dynamics simulation and ligand-receptor contacts analysis as a new approach for pharmacophore modeling: beta-secretase 1 and check point kinase 1 as case studies
Published in Journal of computer-aided molecular design (01-12-2016)“…Ligand-based pharmacophore modeling require relatively long lists of active compounds, while a pharmacophore based on a single ligand-receptor crystallographic…”
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Docking-generated multiple ligand poses for bootstrapping bioactivity classifying Machine Learning: Repurposing covalent inhibitors for COVID-19-related TMPRSS2 as case study
Published in Computational and structural biotechnology journal (01-01-2021)“…[Display omitted] In the present work we introduce the use of multiple docked poses for bootstrapping machine learning-based QSAR modelling. Ligand-receptor…”
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7
Global Structure of a Three-Way Junction in a Phi29 Packaging RNA Dimer Determined Using Site-Directed Spin Labeling
Published in Journal of the American Chemical Society (08-02-2012)“…The condensation of bacteriophage phi29 genomic DNA into its preformed procapsid requires the DNA packaging motor, which is the strongest known biological…”
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8
Computer modeling of nitroxide spin labels on proteins
Published in Biopolymers (01-01-2012)“…Electron paramagnetic resonance using site‐directed spin labeling can be used as an approach for determination of protein structures that are difficult to…”
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Ligand-based modeling followed by in vitro bioassay yielded new potent glucokinase activators
Published in Journal of molecular graphics & modelling (01-03-2015)“…Pharmacophore/QSAR modelling accessed new potent glucokinase activators. •30 Glucokinase activators were modeled by a combination of pharmacophore and QSAR…”
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10
Idealized Models of Protofilaments of Human Islet Amyloid Polypeptide
Published in Journal of chemical information and modeling (26-11-2012)“…Fibrils formed by assembly of human islet amyloid polypeptide (hIAPP) are found in most patients with type II diabetes. Structurally, these fibrils are…”
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Understanding the challenges to COVID-19 vaccines and treatment options, herd immunity and probability of reinfection
Published in Journal of Taibah University Medical Sciences (01-06-2023)“…على عكس الأوبئة في الماضي، شهد تفشي مرض كوفيد-19 الذي ينتقل بسرعة في جميع أنحاء العالم نهجا مختلفا تماما للضوابط والتدابير التي تم تنفيذها في جميع البلدان…”
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Conformational Variants of Duplex DNA Correlated with Cytosine-rich Chromosomal Fragile Sites
Published in The Journal of biological chemistry (13-03-2009)“…We found that several major chromosomal fragile sites in human lymphomas, including the bcl-2 major breakpoint region, bcl-1 major translocation cluster, and…”
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Nitroxide Sensing of a DNA Microenvironment: Mechanistic Insights from EPR Spectroscopy and Molecular Dynamics Simulations
Published in The journal of physical chemistry. B (07-06-2012)“…The behavior of the nitroxide spin labels 1-oxyl-4-bromo-2,2,5,5-tetramethylpyrroline (R5a) and 1-oxyl-2,2,5,5-tetramethylpyrroline (R5) attached at a…”
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14
Antiviral and Immunomodulatory Effects of Phytochemicals from Honey against COVID-19: Potential Mechanisms of Action and Future Directions
Published in Molecules (Basel, Switzerland) (01-11-2020)“…The new coronavirus disease (COVID-19), caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), has recently put the world under stress,…”
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Extending the spectrum of CLRN1‐ and ABCA4‐associated inherited retinal dystrophies caused by novel and recurrent variants using exome sequencing
Published in Molecular genetics & genomic medicine (01-03-2020)“…Background Inherited retinal dystrophies (IRDs) are characterized by extreme genetic and clinical heterogeneity. There are many genes that are known to cause…”
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Side Effects and Perceptions Following COVID-19 Vaccination in Jordan: A Randomized, Cross-Sectional Study Implementing Machine Learning for Predicting Severity of Side Effects
Published in Vaccines (Basel) (26-05-2021)“…Background: Since the coronavirus disease 2019 (COVID-19) was declared a pandemic, there was no doubt that vaccination is the ideal protocol to tackle it…”
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Screening the RFX6-DNA binding domain for potential genetic variants in patients with type 2 diabetes
Published in World journal of diabetes (15-03-2019)“…The regulatory factor X6 (RFX6), a member of regulatory factor X family, is known to play a key role in the development and differentiation of pancreatic beta…”
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Exploring the influence of culture conditions on kefir's anticancer properties
Published in Journal of dairy science (01-05-2018)“…Cancer is a major health problem in many parts of the world. Conventional anticancer treatments are painful, expensive, and unsafe. Therefore, demand is…”
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Discovery of new Cdc2-like kinase 4 (CLK4) inhibitors via pharmacophore exploration combined with flexible docking-based ligand/receptor contact fingerprints and machine learning
Published in RSC advances (31-03-2022)“…Cdc2-like kinase 4 (CLK4) inhibitors are of potential therapeutic value in many diseases particularly cancer. In this study, we combined extensive ligand-based…”
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Comprehensive Structural and Molecular Comparison of Spike Proteins of SARS-CoV-2, SARS-CoV and MERS-CoV, and Their Interactions with ACE2
Published in Cells (Basel, Switzerland) (08-12-2020)“…The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has recently emerged in China and caused a disease called coronavirus disease 2019 (COVID-19)…”
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