Search Results - "Hassan Khatami, Mohammad"

Gate-based quantum computing for protein design by Khatami, Mohammad Hassan, Mendes, Udson C, Wiebe, Nathan, Kim, Philip M

“…Protein design is a technique to engineer proteins by permuting amino acids in the sequence to obtain novel functionalities. However, exploring all possible…”
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Using geometric criteria to study helix-like structures produced in molecular dynamics simulations of single amylose chains in water by Khatami, Mohammad Hassan, Barber, William, de Haan, Hendrick W

“…Amylose is a linear polymer chain of α- d -glucose units connected through α(1 → 4) glycosidic bonds. Experimental studies show that in non-polar solvents,…”
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Molecular dynamics simulations of histidine-containing cod antimicrobial peptide paralogs in self-assembled bilayers by Khatami, Mohammad Hassan, Bromberek, Marek, Saika-Voivod, Ivan, Booth, Valerie

“…Gaduscidin-1 and -2 (GAD-1 and GAD-2) are antimicrobial peptides (AMPs) that contain several histidine residues and are thus expected to exhibit pH-dependent…”
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Molecular Characterization of Binding Loop E in the Nematode Cys-Loop GABA Receptor by Kwaka, Ariel, Hassan Khatami, Mohammad, Foster, Joshua, Cochrane, Everett, Habibi, Sarah A, de Haan, Hendrick W, Forrester, Sean G

“…Nematodes exhibit a vast array of cys-loop ligand-gated ion channels with unique pharmacologic characteristics. However, many of the structural components that…”
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All-Atom Molecular Dynamics Simulations of Dimeric Lung Surfactant Protein B in Lipid Multilayers by Robichaud, Nicholas A S, Khatami, Mohammad Hassan, Saika-Voivod, Ivan, Booth, Valerie

“…Although lung surfactant protein B (SP-B) is an essential protein that plays a crucial role in breathing, the details of its structure and mechanism are not…”
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A mutational and molecular dynamics study of the cys-loop GABA receptor Hco-UNC-49 from Haemonchus contortus: Agonist recognition in the nematode GABA receptor family by Foster, Josh, Cochrane, Everett, Khatami, Mohammad Hassan, Habibi, Sarah A., de Haan, Hendrick, Forrester, Sean G.

“…The UNC-49 receptor is a unique nematode γ-aminobutyric acid (GABA)-gated chloride channel that may prove to be a novel target for the development of…”
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Gate-based Quantum Computing for Protein Design by Khatami, Mohammad Hassan, Mendes, Udson C, Wiebe, Nathan, Kim, Philip M

“…Protein design is a technique to engineer proteins by modifying their sequence to obtain novel functionalities. In this method, amino acids in the sequence are…”
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Conjugating Ligands to an Equilibrated Nanoparticle Protein Corona Enables Cell Targeting in Serum by Stordy, Benjamin, Zhang, Yuwei, Sepahi, Zahra, Khatami, Mohammad Hassan, Kim, Philip M., Chan, Warren C. W.

“…Targeting ligands are conjugated onto nanoparticles to increase their selectivity for diseased cells. However, they become covered by serum proteins which…”
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All-atom molecular dynamics simulations of lung surfactant protein B: Structural features of SP-B promote lipid reorganization by Khatami, Mohammad Hassan, Saika-Voivod, Ivan, Booth, Valerie

“…Lung surfactant protein B (SP-B), a 79 residue, hydrophobic protein from the saposin superfamily, plays an essential role in breathing. Because of the extreme…”
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Characterization of adjacent charged residues near the agonist binding site of the nematode UNC-49 GABA receptor by Cochrane, Everett, Foster, Joshua, Khatami, Mohammad Hassan, de Haan, Hendrick W., Forrester, Sean G.

“…The UNC-49 receptor is a Cys-loop GABA receptor that is unique to the nematode phylum. The receptor differs from mammalian GABA receptors both in amino acid…”
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Experimental and Computational Studies of Pulmonary Surfactant Protein SP-B Interacting with Lipid Bilayers by Khatami, Mohammad Hassan, Saika-Voivod, Ivan, Booth, Valerie

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Two-dimensional 67 Zn HYSCORE spectroscopy reveals that a Zn-bacteriochlorophyll a P ' dimer is the primary donor (P 840 ) in the type-1 reaction centers of Chloracidobacterium thermophilum by Charles, Philip, Kalendra, Vidmantas, He, Zhihui, Khatami, Mohammad Hassan, Golbeck, John H, van der Est, Art, Lakshmi, K V, Bryant, Donald A

“…Chloracidobacterium (C.) thermophilum is a microaerophilic, chlorophototrophic species in the phylum Acidobacteria that uses homodimeric type-1 reaction…”
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All-Atom Molecular Dynamic Simulations of Pulmonary Surfactant Protein Sp-B Interacting with Lipid Bilayers by Khatami, Mohammad Hassan, Saika-Voivod, Ivan, Booth, Valerie

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Molecular Dynamics Simulations of Cod Antimicrobial Peptide Paralogs in Self-Assembled Bilayers by Hassan Khatami, Mohammad, Bromberek, Marek, Saika-Voivod, Ivan, Booth, Valerie

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