Search Results - "Harte, Rachel A"

ENCODE data in the UCSC Genome Browser: year 5 update by Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James

“…The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog…”
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The UCSC Genome Browser database: extensions and updates 2013 by Meyer, Laurence R, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Kuhn, Robert M, Wong, Matthew, Sloan, Cricket A, Rosenbloom, Kate R, Roe, Greg, Rhead, Brooke, Raney, Brian J, Pohl, Andy, Malladi, Venkat S, Li, Chin H, Lee, Brian T, Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M, Fujita, Pauline A, Dreszer, Timothy R, Diekhans, Mark, Cline, Melissa S, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W James

“…The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence…”
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The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes by Pruitt, Kim D, Harrow, Jennifer, Harte, Rachel A, Wallin, Craig, Diekhans, Mark, Maglott, Donna R, Searle, Steve, Farrell, Catherine M, Loveland, Jane E, Ruef, Barbara J, Hart, Elizabeth, Suner, Marie-Marthe, Landrum, Melissa J, Aken, Bronwen, Ayling, Sarah, Baertsch, Robert, Fernandez-Banet, Julio, Cherry, Joshua L, Curwen, Val, Dicuccio, Michael, Kellis, Manolis, Lee, Jennifer, Lin, Michael F, Schuster, Michael, Shkeda, Andrew, Amid, Clara, Brown, Garth, Dukhanina, Oksana, Frankish, Adam, Hart, Jennifer, Maidak, Bonnie L, Mudge, Jonathan, Murphy, Michael R, Murphy, Terence, Rajan, Jeena, Rajput, Bhanu, Riddick, Lillian D, Snow, Catherine, Steward, Charles, Webb, David, Weber, Janet A, Wilming, Laurens, Wu, Wenyu, Birney, Ewan, Haussler, David, Hubbard, Tim, Ostell, James, Durbin, Richard, Lipman, David

“…Effective use of the human and mouse genomes requires reliable identification of genes and their products. Although multiple public resources provide…”
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The UCSC Genome Browser database: 2016 update by Speir, Matthew L, Zweig, Ann S, Rosenbloom, Kate R, Raney, Brian J, Paten, Benedict, Nejad, Parisa, Lee, Brian T, Learned, Katrina, Karolchik, Donna, Hinrichs, Angie S, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Fujita, Pauline A, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James

“…For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for…”
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The UCSC Genome Browser database: 2015 update by Rosenbloom, Kate R, Armstrong, Joel, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S, Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T, Li, Chin H, Miga, Karen H, Nguyen, Ngan, Paten, Benedict, Raney, Brian J, Smit, Arian F A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

“…Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow,…”
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The UCSC Genome Browser database: 2014 update by Karolchik, Donna, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hinrichs, Angie S, Learned, Katrina, Lee, Brian T, Li, Chin H, Raney, Brian J, Rhead, Brooke, Rosenbloom, Kate R, Sloan, Cricket A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

“…The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence…”
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UCSC Genome Browser database: update 2011 by Fujita, Pauline A, Rhead, Brooke, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Cline, Melissa S, Goldman, Mary, Barber, Galt P, Clawson, Hiram, Coelho, Antonio, Diekhans, Mark, Dreszer, Timothy R, Giardine, Belinda M, Harte, Rachel A, Hillman-Jackson, Jennifer, Hsu, Fan, Kirkup, Vanessa, Kuhn, Robert M, Learned, Katrina, Li, Chin H, Meyer, Laurence R, Pohl, Andy, Raney, Brian J, Rosenbloom, Kate R, Smith, Kayla E, Haussler, David, Kent, W. James

“…The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for…”
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UCSC Genome Browser database: update 2010 by Rhead, Brooke, Karolchik, Donna, Kuhn, Robert M, Hinrichs, Angie S, Zweig, Ann S, Fujita, Pauline A, Diekhans, Mark, Smith, Kayla E, Rosenbloom, Kate R, Raney, Brian J, Pohl, Andy, Pheasant, Michael, Meyer, Laurence R, Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A, Giardine, Belinda, Dreszer, Timothy R, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W. James

“…The University of California, Santa Cruz (UCSC) Genome Browser website (http://genome.ucsc.edu/) provides a large database of publicly available sequence and…”
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The UCSC Genome Browser database: extensions and updates 2011 by Dreszer, Timothy R., Karolchik, Donna, Zweig, Ann S., Hinrichs, Angie S., Raney, Brian J., Kuhn, Robert M., Meyer, Laurence R., Wong, Mathew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Pohl, Andy, Malladi, Venkat S., Li, Chin H., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Harte, Rachel A., Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, James Kent, W.

“…The University of California Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and…”
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ENCODE whole-genome data in the UCSC Genome Browser: update 2012 by Rosenbloom, Kate R., Dreszer, Timothy R., Long, Jeffrey C., Malladi, Venkat S., Sloan, Cricket A., Raney, Brian J., Cline, Melissa S., Karolchik, Donna, Barber, Galt P., Clawson, Hiram, Diekhans, Mark, Fujita, Pauline A., Goldman, Mary, Gravell, Robert C., Harte, Rachel A., Hinrichs, Angie S., Kirkup, Vanessa M., Kuhn, Robert M., Learned, Katrina, Maddren, Morgan, Meyer, Laurence R., Pohl, Andy, Rhead, Brooke, Wong, Matthew C., Zweig, Ann S., Haussler, David, Kent, W. James

“…The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional…”
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Current status and new features of the Consensus Coding Sequence database by Farrell, Catherine M, O'Leary, Nuala A, Harte, Rachel A, Loveland, Jane E, Wilming, Laurens G, Wallin, Craig, Diekhans, Mark, Barrell, Daniel, Searle, Stephen M J, Aken, Bronwen, Hiatt, Susan M, Frankish, Adam, Suner, Marie-Marthe, Rajput, Bhanu, Steward, Charles A, Brown, Garth R, Bennett, Ruth, Murphy, Michael, Wu, Wendy, Kay, Mike P, Hart, Jennifer, Rajan, Jeena, Weber, Janet, Snow, Catherine, Riddick, Lillian D, Hunt, Toby, Webb, David, Thomas, Mark, Tamez, Pamela, Rangwala, Sanjida H, McGarvey, Kelly M, Pujar, Shashikant, Shkeda, Andrei, Mudge, Jonathan M, Gonzalez, Jose M, Gilbert, James G R, Trevanion, Stephen J, Baertsch, Robert, Harrow, Jennifer L, Hubbard, Tim, Ostell, James M, Haussler, David, Pruitt, Kim D

“…The Consensus Coding Sequence (CCDS) project (http://www.ncbi.nlm.nih.gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that…”
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The ENCODE Project at UC Santa Cruz by Thomas, Daryl J, Rosenbloom, Kate R, Clawson, Hiram, Hinrichs, Angie S, Trumbower, Heather, Raney, Brian J, Karolchik, Donna, Barber, Galt P, Harte, Rachel A, Hillman-Jackson, Jennifer, Kuhn, Robert M, Rhead, Brooke L, Smith, Kayla E, Thakkapallayil, Archana

“…The goal of the Encyclopedia Of DNA Elements (ENCODE) Project is to identify all functional elements in the human genome. The pilot phase is for comparison of…”
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ENCODE Project at UC Santa Cruz by Thomas, Daryl J, Rosenbloom, Kate R, Clawson, Hiram, Hinrichs, Angie S, Trumbower, Heather, Raney, Brian J, Karolchik, Donna, Barber, Galt P, Harte, Rachel A, Hillman-Jackson, Jennifer, Kuhn, Robert M, Rhead, Brooke L, Smith, Kayla E, Thakkapallayil, Archana, Zweig, Ann S, Haussler, David, Kent, W. James

“…The goal of the Encyclopedia Of DNA Elements (ENCODE) Project is to identify all functional elements in the human genome. The pilot phase is for comparison of…”
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RACK1: a novel substrate for the Src protein-tyrosine kinase by CHANG, Betty Y, HARTE, Rachel A, CARTWRIGHT, Christine A

“…RACK1 is one of a group of PKC-interacting proteins collectively called RACKs (Receptors for Activated C-Kinases). Previously, we showed that RACK1 also…”
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Tracking and coordinating an international curation effort for the CCDS Project by Harte, Rachel A, Farrell, Catherine M, Loveland, Jane E, Suner, Marie-Marthe, Wilming, Laurens, Aken, Bronwen, Barrell, Daniel, Frankish, Adam, Wallin, Craig, Searle, Steve, Diekhans, Mark, Harrow, Jennifer, Pruitt, Kim D

“…The Consensus Coding Sequence (CCDS) collaboration involves curators at multiple centers with a goal of producing a conservative set of high quality,…”
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Low level expression of hormone-sensitive lipase in arterial macrophage-derived foam cells: potential explanation for low rates of cholesteryl ester hydrolysis by Harte, Rachel A, Hultén, Lillemor M, Lindmark, Helena, Reue, Karen, Schotz, Michael C, Khoo, John, Rosenfeld, Michael E

“…Conversion of arterial macrophages into foam cells is a key process involved in both the initiation and progression of atherosclerotic lesions. Foam cell…”
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RACK1 inhibits the serum- and anchorage-independent growth of v-Src transformed cells by Mamidipudi, Vidya, Chang, Betty Y., Harte, Rachel A., Lee, Kelly C., Cartwright, Christine A.

“…Cancer cells are capable of serum- and anchorage-independent growth, and focus formation on monolayers of normal cells. Previously, we showed that RACK1…”
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Piloting the zebrafish genome browser by DiBiase, Anthony, Harte, Rachel A., Zhou, Yi, Zon, Leonard, Kent, W. James

“…This correspondence is a primer for the zebrafish research community on zebrafish tracks available in the UCSC Genome Browser at http://genome.ucsc.edu based…”
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Erratum: RACK1: a novel substrate for the Src protein-tyrosine kinase by Chang, Betty Y, Harte, Rachel A, Cartwright, Christine A

“…Correction to : Oncogene (2002) 21, 7619–7629. doi:10.1038/sj.onc.1206002 Due to a typesetting error, the wrong version of Figure 5 was published in the above…”
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RACK1: a novel substrate for the Src protein-tyrosine kinase by Chang, Betty Y, Harte, Rachel A, Cartwright, Christine A

“…Oncogene (2003) 22, 1748. doi:10.1038/sj.onc.1206276…”
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