Search Results - "Harrison, Ryan M"

Coarse-graining DNA for simulations of DNA nanotechnology by Doye, Jonathan P K, Ouldridge, Thomas E, Louis, Ard A, Romano, Flavio, Šulc, Petr, Matek, Christian, Snodin, Benedict E K, Rovigatti, Lorenzo, Schreck, John S, Harrison, Ryan M, Smith, William P J

“…To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained description. Here we provide an overview of different…”
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A Self-Threading Polythiophene: Defect-Free Insulated Molecular Wires Endowed with Long Effective Conjugation Length by Sugiyasu, Kazunori, Honsho, Yoshihito, Harrison, Ryan M, Sato, Akira, Yasuda, Takeshi, Seki, Shu, Takeuchi, Masayuki

“…Herein, we report on a self-threading polythiophene whose conjugated molecular wire is sheathed within its own cyclic side chains. The defect-free insulating…”
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Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model by Harrison, Ryan M, Romano, Flavio, Ouldridge, Thomas E, Louis, Ard A, Doye, Jonathan P. K

“…DNA cyclization is a powerful technique to gain insight into the nature of DNA bending. While the wormlike chain model provides a good description of small to…”
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Coarse-Grained Modelling of Extreme DNA Bending by Harrison, Ryan M., Louis, A.A., Doye, Jonathan P.K.

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Molecular biophysics of strong DNA bending and the RecQ DNA helicase by Harrison, Ryan M

“…Molecular biophysics is a rapidly evolving field aimed at the physics-based investigation of the biomolecular processes that enable life. In this thesis, we…”
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Molecular biophysics of strong dna bending and the recq dna helicase by Harrison, Ryan M

“…Molecular biophysics is a rapidly evolving field aimed at the physics-based investigation of the biomolecular processes that enable life. In this thesis, we…”
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Free-energy landscapes of DNA and its assemblies: Perspectives from coarse-grained modelling by Doye, Jonathan P. K, Louis, Ard A, Schreck, John S, Romano, Flavio, Harrison, Ryan M, Mosayebi, Majid, Engel, Megan C, Ouldridge, Thomas E

“…Frontiers of Nanoscience, Vol. 21, Ch. 9, pp 195-210 (2022) This chapter will provide an overview of how characterizing free-energy landscapes can provide…”
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Coarse-grained modelling of strong DNA bending I: Thermodynamics and comparison to an experimental "molecular vice" by Harrison, Ryan M, Romano, Flavio, Ouldridge, Thomas E, Louis, Ard A, Doye, Jonathan P. K

“…DNA bending is biologically important for genome regulation and is relevant to a range of nanotechnological systems. Recent results suggest that sharp bending…”
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Coarse-grained modelling of strong DNA bending II: Cyclization by Harrison, Ryan M, Romano, Flavio, Ouldridge, Thomas E, Louis, Ard A, Doye, Jonathan P. K

“…DNA cyclization is a powerful technique to gain insight into the nature of DNA bending. The worm-like chain model provides a good description of small to…”
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Coarse-graining DNA for simulations of DNA nanotechnology by Doye, Jonathan P. K, Ouldridge, Thomas E, Louis, Ard A, Romano, Flavio, Sulc, Petr, Matek, Christian, Snodin, Benedict E. K, Rovigatti, Lorenzo, Schreck, John S, Harrison, Ryan M, Smith, William P. J

“…Phys. Chem. Chem. Phys. 15, 20395-20414 (2013) To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained…”
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