Search Results - "Hardy, David"

Comparative Study of Injury Models for Studying Muscle Regeneration in Mice by Hardy, David, Besnard, Aurore, Latil, Mathilde, Jouvion, Grégory, Briand, David, Thépenier, Cédric, Pascal, Quentin, Guguin, Aurélie, Gayraud-Morel, Barbara, Cavaillon, Jean-Marc, Tajbakhsh, Shahragim, Rocheteau, Pierre, Chrétien, Fabrice

“…A longstanding goal in regenerative medicine is to reconstitute functional tissues or organs after injury or disease. Attention has focused on the…”
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HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA) by Kinloch, Natalie N., Ren, Yanqin, Conce Alberto, Winiffer D., Dong, Winnie, Khadka, Pragya, Huang, Szu Han, Mota, Talia M., Wilson, Andrew, Shahid, Aniqa, Kirkby, Don, Harris, Marianne, Kovacs, Colin, Benko, Erika, Ostrowski, Mario A., Del Rio Estrada, Perla M., Wimpelberg, Avery, Cannon, Christopher, Hardy, W. David, MacLaren, Lynsay, Goldstein, Harris, Brumme, Chanson J., Lee, Guinevere Q., Lynch, Rebecca M., Brumme, Zabrina L., Jones, R. Brad

“…The Intact Proviral DNA Assay (IPDA) was developed to address the critical need for a scalable method for intact HIV-1 reservoir quantification. This droplet…”
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TopoGromacs: Automated Topology Conversion from CHARMM to GROMACS within VMD by Vermaas, Josh V, Hardy, David J, Stone, John E, Tajkhorshid, Emad, Kohlmeyer, Axel

“…Molecular dynamics (MD) simulation engines use a variety of different approaches for modeling molecular systems with force fields that govern their dynamics…”
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GPU-accelerated molecular modeling coming of age by Stone, John E., Hardy, David J., Ufimtsev, Ivan S., Schulten, Klaus

“…[Display omitted] ▶ GPUs have become powerful accelerators for molecular modeling applications. ▶ GPUs provide better price-performance than traditional…”
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BCL-2 antagonism sensitizes cytotoxic T cell-resistant HIV reservoirs to elimination ex vivo by Ren, Yanqin, Huang, Szu Han, Patel, Shabnum, Alberto, Winiffer D Conce, Magat, Dean, Ahimovic, Dughan, Macedo, Amanda B, Durga, Ryan, Chan, Dora, Zale, Elizabeth, Mota, Talia M, Truong, Ronald, Rohwetter, Thomas, McCann, Chase D, Kovacs, Colin M, Benko, Erika, Wimpelberg, Avery, Cannon, Christopher, Hardy, W David, Bosque, Alberto, Bollard, Catherine M, Jones, R Brad

“…Curing HIV infection will require the elimination of a reservoir of infected CD4+ T cells that persists despite HIV-specific cytotoxic T cell (CTL) responses…”
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Membrane protein extraction and purification using styrene-maleic acid (SMA) copolymer: effect of variations in polymer structure by Morrison, Kerrie A, Akram, Aneel, Mathews, Ashlyn, Khan, Zoeya A, Patel, Jaimin H, Zhou, Chumin, Hardy, David J, Moore-Kelly, Charles, Patel, Roshani, Odiba, Victor, Knowles, Tim J, Javed, Masood-Ul-Hassan, Chmel, Nikola P, Dafforn, Timothy R, Rothnie, Alice J

“…The use of styrene-maleic acid (SMA) copolymers to extract and purify transmembrane proteins, while retaining their native bilayer environment, overcomes many…”
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py-MCMD: Python Software for Performing Hybrid Monte Carlo/Molecular Dynamics Simulations with GOMC and NAMD by Barhaghi, Mohammad Soroush, Crawford, Brad, Schwing, Gregory, Hardy, David J., Stone, John E., Schwiebert, Loren, Potoff, Jeffrey, Tajkhorshid, Emad

“…py-MCMD, an open-source Python software, provides a robust workflow layer that manages communication of relevant system information between the simulation…”
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Boosting Free-Energy Perturbation Calculations with GPU-Accelerated NAMD by Chen, Haochuan, Maia, Julio D. C, Radak, Brian K, Hardy, David J, Cai, Wensheng, Chipot, Christophe, Tajkhorshid, Emad

“…Harnessing the power of graphics processing units (GPUs) to accelerate molecular dynamics (MD) simulations in the context of free-energy calculations has been…”
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Once-daily dolutegravir versus raltegravir in antiretroviral-naive adults with HIV-1 infection: 48 week results from the randomised, double-blind, non-inferiority SPRING-2 study by Raffi, Francois, Prof, Rachlis, Anita, Prof, Stellbrink, Hans-Jürgen, Prof, Hardy, W David, MD, Torti, Carlo, MD, Orkin, Chloe, MD, Bloch, Mark, MD, Podzamczer, Daniel, MD, Pokrovsky, Vadim, Prof, Pulido, Federico, MD, Almond, Steve, MMath, Margolis, David, MD, Brennan, Clare, DPT, Min, Sherene, MD

“…Summary Background Dolutegravir (S/GSK1349572) is a once-daily HIV integrase inhibitor with potent antiviral activity and a favourable safety profile. We…”
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High-Performance Scalable Molecular Dynamics Simulations of a Polarizable Force Field Based on Classical Drude Oscillators in NAMD by Jiang, Wei, Hardy, David J, Phillips, James C, MacKerell, Alexander D, Schulten, Klaus, Roux, Benoît

“…Incorporating the influence of induced polarization in large-scale atomistic molecular dynamics (MD) simulations is a critical challenge in the progress toward…”
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Hidden Biomass of Intact Malaria Parasites in the Human Spleen by Kho, Steven, Qotrunnada, Labibah, Leonardo, Leo, Andries, Benediktus, Wardani, Putu A.I, Fricot, Aurelie, Henry, Benoit, Hardy, David, Margyaningsih, Nur I, Apriyanti, Dwi, Puspitasari, Agatha M, Prayoga, Pak, Trianty, Leily, Kenangalem, Enny, Chretien, Fabrice, Safeukui, Innocent, del Portillo, Hernando A, Fernandez-Becerra, Carmen, Meibalan, Elamaran, Marti, Matthias, Price, Ric N, Woodberry, Tonia, Ndour, Papa A, Russell, Bruce M, Yeo, Tsin W, Minigo, Gabriela, Noviyanti, Rintis, Poespoprodjo, Jeanne R, Siregar, Nurjati C, Buffet, Pierre A, Anstey, Nicholas M

“…In this report, patients living in a malaria-endemic area underwent trauma-related splenectomy. In these asymptomatic patients who were naturally infected with…”
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Experimental Investigation of a Novel Solar Micro-Channel Loop-Heat-Pipe Photovoltaic/Thermal (MC-LHP-PV/T) System for Heat and Power Generation by Yu, Min, Chen, Fucheng, Zheng, Siming, Zhou, Jinzhi, Zhao, Xudong, Wang, Zhangyuan, Li, Guiqiang, Li, Jing, Fan, Yi, Ji, Jie, Diallo, Theirno M.O., Hardy, David

“…•A novel MC-LHP-PV/T heat and power system was experimentally investigated.•New PV/T system achieved 18.55% higher solar efficiency compared to existing…”
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Contemporary management and natural history of aberrant right subclavian artery by Dong, Siwei, Alarhayem, Abdul Q., Meier, Garrett, Hardy, David M., Lyden, Sean P., Farivar, Behzad S.

“…An aberrant right subclavian artery (ARSA) is the most common congenital anomaly of the aortic arch. A paucity of reported studies is available regarding the…”
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Brain and cognitive reserve: Mediator(s) and construct validity, a critique by Satz, Paul, Cole, Michael A., Hardy, David J., Rassovsky, Yuri

“…The concept of "reserve" has traditionally been defined on the basis of a single indicator (e.g., education or intracranial volume) that purports to moderate…”
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Accelerating molecular modeling applications with graphics processors by Stone, John E, Phillips, James C, Freddolino, Peter L, Hardy, David J, Trabuco, Leonardo G, Schulten, Klaus

“…Molecular mechanics simulations offer a computational approach to study the behavior of biomolecules at atomic detail, but such simulations are limited in size…”
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Neuroergonomics: A Perspective from Neuropsychology, with a Proposal about Workload by Hardy, David J.

“…In a brief overview of neuroergonomics, including some personal reminiscences of Raja Parasuraman, it is recognized that the field of human factors and…”
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Evaluation of splenic accumulation and colocalization of immature reticulocytes and Plasmodium vivax in asymptomatic malaria: A prospective human splenectomy study by Kho, Steven, Qotrunnada, Labibah, Leonardo, Leo, Andries, Benediktus, Wardani, Putu A I, Fricot, Aurelie, Henry, Benoit, Hardy, David, Margyaningsih, Nur I, Apriyanti, Dwi, Puspitasari, Agatha M, Prayoga, Pak, Trianty, Leily, Kenangalem, Enny, Chretien, Fabrice, Brousse, Valentine, Safeukui, Innocent, Del Portillo, Hernando A, Fernandez-Becerra, Carmen, Meibalan, Elamaran, Marti, Matthias, Price, Ric N, Woodberry, Tonia, Ndour, Papa A, Russell, Bruce M, Yeo, Tsin W, Minigo, Gabriela, Noviyanti, Rintis, Poespoprodjo, Jeanne R, Siregar, Nurjati C, Buffet, Pierre A, Anstey, Nicholas M

“…A very large biomass of intact asexual-stage malaria parasites accumulates in the spleen of asymptomatic human individuals infected with Plasmodium vivax. The…”
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Physical, Emotional, and Psychosocial Challenges Associated with Daily Dosing of HIV Medications and Their Impact on Indicators of Quality of Life: Findings from the Positive Perspectives Study by de los Rios, Patricia, Okoli, Chinyere, Castellanos, Erika, Allan, Brent, Young, Benjamin, Brough, Garry, Muchenje, Marvelous, Eremin, Anton, Corbelli, Giulio Maria, McBritton, Marta, Hardy, W. David, Van de Velde, Nicolas

“…To assess challenges with daily oral antiretroviral therapy (ART), we analyzed data for 2389 participants in the 2019 Positive Perspectives survey of people…”
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Dual vaccination against IL-4 and IL-13 protects against chronic allergic asthma in mice by Conde, Eva, Bertrand, Romain, Balbino, Bianca, Bonnefoy, Jonathan, Stackowicz, Julien, Caillot, Noémie, Colaone, Fabien, Hamdi, Samir, Houmadi, Raïssa, Loste, Alexia, Kamphuis, Jasper B. J., Huetz, François, Guilleminault, Laurent, Gaudenzio, Nicolas, Mougel, Aurélie, Hardy, David, Snouwaert, John N., Koller, Beverly H., Serra, Vincent, Bruhns, Pierre, Grouard-Vogel, Géraldine, Reber, Laurent L.

“…Allergic asthma is characterized by elevated levels of IgE antibodies, type 2 cytokines such as interleukin-4 (IL-4) and IL-13, airway hyperresponsiveness…”
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Proton minibeam radiation therapy spares normal rat brain: Long-Term Clinical, Radiological and Histopathological Analysis by Prezado, Yolanda, Jouvion, Gregory, Hardy, David, Patriarca, Annalisa, Nauraye, Catherine, Bergs, Judith, González, Wilfredo, Guardiola, Consuelo, Juchaux, Marjorie, Labiod, Dalila, Dendale, Remi, Jourdain, Laurène, Sebrie, Catherine, Pouzoulet, Frederic

“…Proton minibeam radiation therapy (pMBRT) is a novel strategy for minimizing normal tissue damage resulting from radiotherapy treatments. This strategy…”
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