Search Results - "Harb, Omar S."

ToxoDB: Functional Genomics Resource for Toxoplasma and Related Organisms by Harb, Omar S, Roos, David S

“…ToxoDB is a free online resource that provides access to genomic and functional genomic data. All data is made available through an intuitive queryable…”
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EuPathDB: the eukaryotic pathogen genomics database resource by Aurrecoechea, Cristina, Barreto, Ana, Basenko, Evelina Y, Brestelli, John, Brunk, Brian P, Cade, Shon, Crouch, Kathryn, Doherty, Ryan, Falke, Dave, Fischer, Steve, Gajria, Bindu, Harb, Omar S, Heiges, Mark, Hertz-Fowler, Christiane, Hu, Sufen, Iodice, John, Kissinger, Jessica C, Lawrence, Cris, Li, Wei, Pinney, Deborah F, Pulman, Jane A, Roos, David S, Shanmugasundram, Achchuthan, Silva-Franco, Fatima, Steinbiss, Sascha, Stoeckert, Jr, Christian J, Spruill, Drew, Wang, Haiming, Warrenfeltz, Susanne, Zheng, Jie

“…The Eukaryotic Pathogen Genomics Database Resource (EuPathDB, http://eupathdb.org) is a collection of databases covering 170+ eukaryotic pathogens (protists &…”
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TriTrypDB: An integrated functional genomics resource for kinetoplastida by Shanmugasundram, Achchuthan, Starns, David, Böhme, Ulrike, Amos, Beatrice, Wilkinson, Paul A, Harb, Omar S, Warrenfeltz, Susanne, Kissinger, Jessica C, McDowell, Mary Ann, Roos, David S, Crouch, Kathryn, Jones, Andrew R

“…Parasitic diseases caused by kinetoplastid parasites are a burden to public health throughout tropical and subtropical regions of the world. TriTrypDB…”
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FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes by Basenko, Evelina Y, Pulman, Jane A, Shanmugasundram, Achchuthan, Harb, Omar S, Crouch, Kathryn, Starns, David, Warrenfeltz, Susanne, Aurrecoechea, Cristina, Stoeckert, Jr, Christian J, Kissinger, Jessica C, Roos, David S, Hertz-Fowler, Christiane

“…FungiDB (fungidb.org) is a free online resource for data mining and functional genomics analysis for fungal and oomycete species. FungiDB is part of the…”
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VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms by Giraldo-Calderón, Gloria I, Harb, Omar S, Kelly, Sarah A, Rund, Samuel SC, Roos, David S, McDowell, Mary Ann

“…•VectorBase (VB) integrates diverse data for invertebrates related to human health.•VB provides tools to mine ‘omics and population data.•Develop new…”
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Fosmidomycin uptake into Plasmodium and Babesia-infected erythrocytes is facilitated by parasite-induced new permeability pathways by Baumeister, Stefan, Wiesner, Jochen, Reichenberg, Armin, Hintz, Martin, Bietz, Sven, Harb, Omar S, Roos, David S, Kordes, Maximilian, Friesen, Johannes, Matuschewski, Kai, Lingelbach, Klaus, Jomaa, Hassan, Seeber, Frank

“…Highly charged compounds typically suffer from low membrane permeability and thus are generally regarded as sub-optimal drug candidates. Nonetheless, the…”
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EuPathDB: a portal to eukaryotic pathogen databases by Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen T, Li, Wei, Miller, John A, Nayak, Vishal, Pennington, Cary, Pinney, Deborah F, Roos, David S, Ross, Chris, Srinivasamoorthy, Ganesh, Stoeckert, Christian J. Jr, Thibodeau, Ryan, Treatman, Charles, Wang, Haiming

“…EuPathDB (http://EuPathDB.org; formerly ApiDB) is an integrated database covering the eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania,…”
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In silico identification of specialized secretory-organelle proteins in apicomplexan parasites and in vivo validation in Toxoplasma gondii by Chen, Zhongqiang, Harb, Omar S, Roos, David S

“…Apicomplexan parasites, including the human pathogens Toxoplasma gondii and Plasmodium falciparum, employ specialized secretory organelles (micronemes,…”
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ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies by Ruhamyankaka, Emmanuel, Brunk, Brian P., Dorsey, Grant, Harb, Omar S., Helb, Danica A., Judkins, John, Kissinger, Jessica C., Lindsay, Brianna, Roos, David S., San, Emmanuel James, Stoeckert, Christian J., Zheng, Jie, Tomko, Sheena Shah

“…The concept of open data has been gaining traction as a mechanism to increase data use, ensure that data are preserved over time, and accelerate discovery…”
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VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center by Amos, Beatrice, Aurrecoechea, Cristina, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y, Bażant, Wojciech, Belnap, Robert, Blevins, Ann S, Böhme, Ulrike, Brestelli, John, Brunk, Brian P, Caddick, Mark, Callan, Danielle, Campbell, Lahcen, Christensen, Mikkel B, Christophides, George K, Crouch, Kathryn, Davis, Kristina, DeBarry, Jeremy, Doherty, Ryan, Duan, Yikun, Dunn, Michael, Falke, Dave, Fisher, Steve, Flicek, Paul, Fox, Brett, Gajria, Bindu, Giraldo-Calderón, Gloria I, Harb, Omar S, Harper, Elizabeth, Hertz-Fowler, Christiane, Hickman, Mark J, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kwon, Dae Kun, Lamoureux, Kristopher, Lawson, Daniel, Li, Wei, Lies, Kallie, Lodha, Disha, Long, Jamie, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Nabrzyski, Jaroslaw, Roos, David S, Rund, Samuel S C, Schulman, Stephanie Wever, Shanmugasundram, Achchuthan, Sitnik, Vasily, Spruill, Drew, Starns, David, Stoeckert, Christian J, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A, Xu, Lin, Zheng, Jie

“…Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the…”
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Toxoplasma gondii Hsp90 is a Potential Drug Target Whose Expression and Subcellular Localization are Developmentally Regulated by Echeverria, Pablo C., Matrajt, Mariana, Harb, Omar S., Zappia, María P., Costas, Monica A., Roos, David S., Dubremetz, Jean François, Angel, Sergio O.

“…Two replicative forms characterize the asexual cycle of the protozoan parasite Toxoplasma gondii: rapidly growing tachyzoites and slowly dividing encysted…”
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MeBoP: Advanced Training in the Biology of Parasitism for Middle Eastern Students by Sheiner, Lilach, Harb, Omar S.

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EuPathDB: The Eukaryotic Pathogen Genomics Database Resource by Warrenfeltz, Susanne, Basenko, Evelina Y, Crouch, Kathryn, Harb, Omar S, Kissinger, Jessica C, Roos, David S, Shanmugasundram, Achchuthan, Silva-Franco, Fatima

“…Fighting infections and developing novel drugs and vaccines requires advanced knowledge of pathogen's biology. Readily accessible genomic, functional genomic,…”
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Scientists swarm into Woods Hole for the 10th Kinetoplastid Molecular Cell Biology Meeting by Keroack, Caroline, Cosentino, Raúl Oscar, Teixeira, Thaise Lara, Lansink, Lianne, Larcombe, Stephen D., Davidge, Brittney, Serra, Lucia, de Graffenried, Christopher, Figueiredo, Luisa M., Harb, Omar S., Povelones, Megan L.

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ClinEpiDB: an open-access clinical epidemiology database resource encouraging online exploration of complex studies by Ruhamyankaka, Emmanuel, Brunk, Brian P, Dorsey, Grant, Harb, Omar S, Helb, Danica A, Judkins, John, Kissinger, Jessica C, Lindsay, Brianna, Roos, David S, San, Emmanuel James, Stoeckert, Christian J, Zheng, Jie, Tomko, Sheena Shah

“…The concept of open data has been gaining traction as a mechanism to increase data use, ensure that data are preserved over time, and accelerate discovery…”
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Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses by Peixoto, Lucia, Chen, Feng, Harb, Omar S, Davis, Paul H, Beiting, Daniel P, Brownback, Catie Small, Ouloguem, Dinkorma, Roos, David S

“…Apicomplexan parasites release factors via specialized secretory organelles (rhoptries, micronemes) that are thought to control host cell responses. In order…”
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What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species by Basenko, Evelina Y, Shanmugasundram, Achchuthan, Böhme, Ulrike, Starns, David, Wilkinson, Paul A, Davison, Helen R, Crouch, Kathryn, Maslen, Gareth, Harb, Omar S, Amos, Beatrice, McDowell, Mary Ann, Kissinger, Jessica C, Roos, David S, Jones, Andrew

“…FungiDB (https://fungidb.org) serves as a valuable online resource that seamlessly integrates genomic and related large-scale data for a wide range of fungal…”
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VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023 by Alvarez-Jarreta, Jorge, Amos, Beatrice, Aurrecoechea, Cristina, Bah, Saikou, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y, Belnap, Robert, Blevins, Ann, Böhme, Ulrike, Brestelli, John, Brown, Stuart, Callan, Danielle, Campbell, Lahcen I, Christophides, George K, Crouch, Kathryn, Davison, Helen R, DeBarry, Jeremy D, Demko, Richard, Doherty, Ryan, Duan, Yikun, Dundore, Walter, Dyer, Sarah, Falke, Dave, Fischer, Steve, Gajria, Bindu, Galdi, Daniel, Giraldo-Calderón, Gloria I, Harb, Omar S, Harper, Elizabeth, Helb, Danica, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kittur, Nupur, Kwon, Dae Kun, Lamoureux, Kristopher, Li, Wei, Lodha, Disha, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Myers, Jeremy, Nural, Mustafa Veysi, Roos, David S, Rund, Samuel S C, Shanmugasundram, Achchuthan, Sitnik, Vasily, Spruill, Drew, Starns, David, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A, Zheng, Jie

“…Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the…”
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FungiDB: an integrated functional genomics database for fungi by Stajich, Jason E., Harris, Todd, Brunk, Brian P., Brestelli, John, Fischer, Steve, Harb, Omar S., Kissinger, Jessica C., Li, Wei, Nayak, Vishal, Pinney, Deborah F., Stoeckert, Chris J., Roos, David S.

“…FungiDB (http://FungiDB.org) is a functional genomic resource for pan-fungal genomes that was developed in partnership with the Eukaryotic Pathogen…”
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PlasmoDB: a functional genomic database for malaria parasites by Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P, Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen, Li, Wei, Miller, John A, Nayak, Vishal, Pennington, Cary, Pinney, Deborah F, Roos, David S, Ross, Chris, Stoeckert, Christian J. Jr, Treatman, Charles, Wang, Haiming

“…PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a…”
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