Search Results - "Hanne, Jeungphill"

Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair by Liu, Jiaquan, Hanne, Jeungphill, Britton, Brooke M., Bennett, Jared, Kim, Daehyung, Lee, Jong-Bong, Fishel, Richard

“…MutS and MutL—the highly conserved core proteins responsible for the repair of mismatched DNA—form sequential stable sliding clamps that together modulate…”
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MutL sliding clamps coordinate exonuclease-independent Escherichia coli mismatch repair by Liu, Jiaquan, Lee, Ryanggeun, Britton, Brooke M., London, James A., Yang, Keunsang, Hanne, Jeungphill, Lee, Jong-Bong, Fishel, Richard

“…A shared paradigm of mismatch repair (MMR) across biology depicts extensive exonuclease-driven strand-specific excision that begins at a distant…”
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ATP Alters the Diffusion Mechanics of MutS on Mismatched DNA by Cho, Won-Ki, Jeong, Cherlhyun, Kim, Daehyung, Chang, Minhyeok, Song, Kyung-Mi, Hanne, Jeungphill, Ban, Changill, Fishel, Richard, Lee, Jong-Bong

“…The mismatch repair (MMR) initiation protein MutS forms at least two types of sliding clamps on DNA: a transient mismatch searching clamp (∼1 s) and an…”
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Dynamic control of strand excision during human DNA mismatch repair by Jeon, Yongmoon, Kim, Daehyung, Martín-López, Juana V., Lee, Ryanggeun, Oh, Jungsic, Hanne, Jeungphill, Fishel, Richard, Lee, Jong-Bong

“…Mismatch repair (MMR) is activated by evolutionarily conserved MutS homologs (MSH) and MutL homologs (MLH/PMS). MSH recognizes mismatched nucleotides and form…”
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Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration by Jones, Nathan D., Lopez Jr, Miguel A., Hanne, Jeungphill, Peake, Mitchell B., Lee, Jong-Bong, Fishel, Richard, Yoder, Kristine E.

“…Retroviruses must integrate their linear viral cDNA into the host genome for a productive infection. Integration is catalysed by the retrovirus-encoded…”
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Repair of oxidative DNA base damage in the host genome influences the HIV integration site sequence preference by Bennett, Geoffrey R, Peters, Ryan, Wang, Xiao-hong, Hanne, Jeungphill, Sobol, Robert W, Bundschuh, Ralf, Fishel, Richard, Yoder, Kristine E

“…Host base excision repair (BER) proteins that repair oxidative damage enhance HIV infection. These proteins include the oxidative DNA damage glycosylases…”
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DNA Mismatch Repair Relies Entirely on Stochastic Transactions by Liu, Jiaquan, Lee, Ryang-Geun, Britton, Brooke, London, James, Hanne, Jeungphill, Lee, Jong-Bong, Fishel, Richard

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Dynamic unwrapping of nucleosomes by HsRAD51 that includes sliding and rotational motion of histone octamers by Senavirathne, Gayan, Mahto, Santosh K, Hanne, Jeungphill, O'Brian, Daniel, Fishel, Richard

“…Wrapping of genomic DNA into nucleosomes poses thermodynamic and kinetic barriers to biological processes such as replication, transcription, repair and…”
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Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair by Liu, Jiaquan, Hanne, Jeungphill, Britton, Brooke M, Bennett, Jared, Kim, Daehyung, Lee, Jong-Bong, Fishel, Richard

“…Mismatched nucleotides arise from polymerase misincorporation errors, recombination between heteroallelic parents and chemical or physical DNA damage. Highly…”
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Muts Homolog Sliding Clamps Shield the DNA from Binding Proteins by Hanne, Jeungphill, Britton, Brooke M., Park, Jonghyun, Liu, Jiaquan, Martin-Lopez, Juana, Jones, Nathan, Schoffner, Matthew, Klajner, Piotr, Bundschuh, Ralf, Lee, Jong-Bong, Fishel, Richard

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MutS homolog sliding clamps shield the DNA from binding proteins by Hanne, Jeungphill, Britton, Brooke M., Park, Jonghyun, Liu, Jiaquan, Martín-López, Juana, Jones, Nathan, Schoffner, Matthew, Klajner, Piotr, Bundschuh, Ralf, Lee, Jong-Bong, Fishel, Richard

“…Sliding clamps on DNA consist of evolutionarily conserved enzymes that coordinate DNA replication, repair, and the cellular DNA damage response. MutS homolog…”
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Widespread nuclease contamination in commonly used oxygen-scavenging systems by Senavirathne, Gayan, Liu, Jiaquan, Lopez, Miguel A, Hanne, Jeungphill, Martin-Lopez, Juana, Lee, Jong-Bong, Yoder, Kristine E, Fishel, Richard

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Single-Molecule Studies on EXOI Excision during DNA Mismatch Repair by Jeon, Yongmoon, Kim, Daehyung, Martín-López, Juana, Lee, Ryanggeun, Oh, Jungsic, Hanne, Jeungphill, Fishel, Richard, Lee, Jong-Bong

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An Efficient Site-Specific Method for Irreversible Covalent Labeling of Proteins with a Fluorophore by Liu, Jiaquan, Hanne, Jeungphill, Britton, Brooke M., Shoffner, Matthew, Albers, Aaron E., Bennett, Jared, Zatezalo, Rachel, Barfield, Robyn, Rabuka, David, Lee, Jong-Bong, Fishel, Richard

“…Fluorophore labeling of proteins while preserving native functions is essential for bulk Förster resonance energy transfer (FRET) interaction and single…”
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Mechanics of binding of a single integration-host-factor protein to DNA by DIXIT, Sanhita, SINGH-ZOCCHI, Mukta, HANNE, Jeungphill, ZOCCHI, Giovanni

“…We report on a single-molecule experiment where we directly observe local bending of a 76 base pair DNA oligomer caused by specific binding of a single…”
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Plastic deformatin of protein monolayers by Singh-Zocchi, Mukta, Jeungphill Hanne, Zocchi, Giovanni

“…Globular proteins are peculiar solids that display both local stability of their conformation and the ability to undergo large cooperative changes of shape…”
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Plastic Deformation of Protein Monolayers by Singh-Zocchi, Mukta, Hanne, Jeungphill, Zocchi, Giovanni

“…Globular proteins are peculiar solids that display both local stability of their conformation and the ability to undergo large cooperative changes of shape…”
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Opening rates of DNA hairpins: experiment and model by Hanne, Jeungphill, Zocchi, Giovanni, Voulgarakis, Nikolaos K, Bishop, Alan R, Rasmussen, Kim Ø

“…We present single-molecule measurements of the opening rate of DNA hairpins under mechanical tension and compare with the results obtained from a…”
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