Search Results - "Handoko, Stephanus Daniel"

Feasibility Structure Modeling: An Effective Chaperone for Constrained Memetic Algorithms by Handoko, S D, Chee Keong Kwoh, Yew-Soon Ong

“…An important issue in designing memetic algorithms (MAs) is the choice of solutions in the population for local refinements, which becomes particularly crucial…”
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Fast, accurate, and reliable molecular docking with QuickVina 2 by Alhossary, Amr, Handoko, Stephanus Daniel, Mu, Yuguang, Kwoh, Chee-Keong

“…The need for efficient molecular docking tools for high-throughput screening is growing alongside the rapid growth of drug-fragment databases. AutoDock Vina…”
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Efficient order sharing with privacy preservation via double auction with split delivery by Handoko, Stephanus Daniel, Hoong Chuin Lau

“…Last-mile logistics is vital to keep the economy of a city going. At the same time, however, the last-mile deliveries exert enormous pressures on the economic,…”
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Achieving Economic and Environmental Sustainabilities in Urban Consolidation Center With Bicriteria Auction by Handoko, Stephanus Daniel, Hoong Chuin Lau, Shih-Fen Cheng

“…Consolidation lies at the heart of the last-mile logistics problem. Urban consolidation centers (UCCs) have been set up to facilitate such consolidation all…”
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CScore: a simple yet effective scoring function for protein-ligand binding affinity prediction using modified CMAC learning architecture by Ouyang, Xuchang, Handoko, Stephanus Daniel, Kwoh, Chee Keong

“…Protein-ligand docking is a computational method to identify the binding mode of a ligand and a target protein, and predict the corresponding binding affinity…”
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QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization by Handoko, Stephanus Daniel, Xuchang Ouyang, Chinh Tran To Su, Chee Keong Kwoh, Yew Soon Ong

“…Predicting binding between macromolecule and small molecule is a crucial phase in the field of rational drug design. AutoDock Vina, one of the most widely used…”
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Erratum to "QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization" by Handoko, Stephanus Daniel, Ouyang, Xuchang, Su, Chinh Tran To, Kwoh, Chee Keong, Ong, Yew Soon

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Solving multi-vehicle profitable tour problem via knowledge adoption in evolutionary bi-level programming by Handoko, Stephanus Daniel, Gupta, Abhishek, Heng Chen Kim, Lau Hoong Chuin, Ong Yew Soon, Tan Puay Siew

“…Profitable tour problem (PTP) belongs to the class of vehicle routing problem (VRP) with profits seeking to maximize the difference between the total collected…”
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Classification-assisted memetic algorithms for solving optimization problems with restricted equality constraint function mapping by Handoko, Stephanus Daniel, Kwoh Chee Keong, Ong Yew Soon, Chan, Jonathan

“…The success of Memetic Algorithms (MAs) has driven many researchers to be more focused on the efficiency aspect of the algorithms such that it would be…”
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Using classification for constrained memetic algorithm: A new paradigm by Handoko, S.D., Kwoh Chee Keong, Ong Yew Soon

“…Regression has been successfully combined with the memetic algorithm (MA) for constructing surrogate models. It is essentially an attempt to approximate the…”
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An auction with rolling horizon for urban consolidation centre by Wang, Chen, Handoko, Stephanus Daniel, Lau, Hoong Chuin

“…A number of cities around the world have adopted urban consolidation centres (UCCs) to address some challenges of their last-mile deliveries. At the UCC, goods…”
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An auction mechanism for the last-mile deliveries via urban consolidation centre by Handoko, Stephanus Daniel, Duc Thien Nguyen, Hoong Chuin Lau

“…A number of cities around the world have adopted urban consolidation centres (UCCs) to address some challenges of their last-mile deliveries. At the UCC, goods…”
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Identifying patterns of conformational changes in HLA-A0201-related immunological activities by Otto, C.N., Handoko, S.D., Kwoh Chee Keong

“…Key to adaptive immune response is the recognition of HLA/peptide complexes by a particular T-cell receptor, which obviously is preceded by HLA binding of the…”
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Structural analysis of (TCR-)HLA/peptide complexes: An initial study by Handoko, S D, Tran To Chinh Su, Chee Keong Kwoh, Yew Soon Ong

“…Key to inducing adaptive immune responses is TCR recognition of HLA/peptide complexes, following HLA binding of the antigenic peptides. Numerous sequence-and…”
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