Search Results - "Handler, David C. L."

Multiple testing corrections in quantitative proteomics: A useful but blunt tool by Pascovici, Dana, Handler, David C. L., Wu, Jemma X., Haynes, Paul A.

“…Multiple testing corrections are a useful tool for restricting the FDR, but can be blunt in the context of low power, as we demonstrate by a series of simple…”
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Correction to “Statistics in Proteomics: A Meta-analysis of 100 Proteomics Papers Published in 2019” by Handler, David C. L, Haynes, Paul A

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Statistics in Proteomics: A Meta-analysis of 100 Proteomics Papers Published in 2019 by Handler, David C. L, Haynes, Paul A

“…We randomly selected 100 journal articles published in five proteomics journals in 2019 and manually examined each of them against a set of 13 criteria…”
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PeptideWitch-A Software Package to Produce High-Stringency Proteomics Data Visualizations from Label-Free Shotgun Proteomics Data by Handler, David C L, Cheng, Flora, Shathili, Abdulrahman M, Haynes, Paul A

“…PeptideWitch is a python-based web module that introduces several key graphical and technical improvements to the Scrappy software platform, which is designed…”
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Comparison of protein and peptide fractionation approaches in protein identification and quantification from Saccharomyces cerevisiae by Deng, Liting, Handler, David C.L., Multari, Dylan H., Haynes, Paul A.

“…•Yeast proteomes were analysed using three different shotgun proteomics approaches.•High resolution mass spectrometry identified more proteins and many more…”
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PeptideMind — Applying machine learning algorithms to assess replicate quality in shotgun proteomic data by Handler, David C.L., Haynes, Paul A.

“…Assessment of replicate quality is an important process for any shotgun proteomics experiment. One fundamental question in proteomics data analysis is whether…”
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