Search Results - "Hamprecht, A."

ilastik: interactive machine learning for (bio)image analysis by Berg, Stuart, Kutra, Dominik, Kroeger, Thorben, Straehle, Christoph N., Kausler, Bernhard X., Haubold, Carsten, Schiegg, Martin, Ales, Janez, Beier, Thorsten, Rudy, Markus, Eren, Kemal, Cervantes, Jaime I, Xu, Buote, Beuttenmueller, Fynn, Wolny, Adrian, Zhang, Chong, Koethe, Ullrich, Hamprecht, Fred A., Kreshuk, Anna

“…We present ilastik, an easy-to-use interactive tool that brings machine-learning-based (bio)image analysis to end users without substantial computational…”
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An objective comparison of cell-tracking algorithms by Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G, Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C, Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C, Solis-Lemus, Jose A, Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred A, Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos

“…This analysis describes the results of three Cell Tracking Challenge editions for examining the performance of cell segmentation and tracking algorithms and…”
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Emergence of azole-resistant invasive aspergillosis in HSCT recipients in Germany by Steinmann, J, Hamprecht, A, Vehreschild, M J G T, Cornely, O A, Buchheidt, D, Spiess, B, Koldehoff, M, Buer, J, Meis, J F, Rath, P-M

“…Aspergillus fumigatus is the most common agent of invasive aspergillosis (IA). In recent years, resistance to triazoles, the mainstay of IA therapy, has…”
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Accurate and versatile 3D segmentation of plant tissues at cellular resolution by Wolny, Adrian, Cerrone, Lorenzo, Vijayan, Athul, Tofanelli, Rachele, Barro, Amaya Vilches, Louveaux, Marion, Wenzl, Christian, Strauss, Sören, Wilson-Sánchez, David, Lymbouridou, Rena, Steigleder, Susanne S, Pape, Constantin, Bailoni, Alberto, Duran-Nebreda, Salva, Bassel, George W, Lohmann, Jan U, Tsiantis, Miltos, Hamprecht, Fred A, Schneitz, Kay, Maizel, Alexis, Kreshuk, Anna

“…Quantitative analysis of plant and animal morphogenesis requires accurate segmentation of individual cells in volumetric images of growing organs. In the last…”
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Comparison of five methods for detection of carbapenemases in Enterobacterales with proposal of a new algorithm by Baeza, L. Lucena, Pfennigwerth, N., Greissl, C., Göttig, S., Saleh, A., Stelzer, Y., Gatermann, S.G., Hamprecht, A.

“…The aim of this study was to evaluate the performance of five different carbapenemase tests and to develop an algorithm which will permit the detection of most…”
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Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures by Imle, Andrea, Kumberger, Peter, Schnellbächer, Nikolas D., Fehr, Jana, Carrillo-Bustamante, Paola, Ales, Janez, Schmidt, Philip, Ritter, Christian, Godinez, William J., Müller, Barbara, Rohr, Karl, Hamprecht, Fred A., Schwarz, Ulrich S., Graw, Frederik, Fackler, Oliver T.

“…Pathogens face varying microenvironments in vivo, but suitable experimental systems and analysis tools to dissect how three-dimensional (3D) tissue…”
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Multicut brings automated neurite segmentation closer to human performance by Beier, Thorsten, Pape, Constantin, Rahaman, Nasim, Prange, Timo, Berg, Stuart, Bock, Davi D, Cardona, Albert, Knott, Graham W, Plaza, Stephen M, Scheffer, Louis K, Koethe, Ullrich, Kreshuk, Anna, Hamprecht, Fred A

“…The connectomics community is acquiring volumetric electron microscopy (EM) images of the brain at an unprecedented rate with the aim of mapping out and…”
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A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule by Vijayan, Athul, Tofanelli, Rachele, Strauss, Sören, Cerrone, Lorenzo, Wolny, Adrian, Strohmeier, Joanna, Kreshuk, Anna, Hamprecht, Fred A, Smith, Richard S, Schneitz, Kay

“…A fundamental question in biology is how morphogenesis integrates the multitude of processes that act at different scales, ranging from the molecular control…”
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Re: ‘Clearance of carbapenemase-producing Enterobacteriaceae (CPE) carriage: a comparative study of NDM-1 and KPC CPE’ by Hamprecht, A., Göttig, S.

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Seipin forms a flexible cage at lipid droplet formation sites by Arlt, Henning, Sui, Xuewu, Folger, Brayden, Adams, Carson, Chen, Xiao, Remme, Roman, Hamprecht, Fred A., DiMaio, Frank, Liao, Maofu, Goodman, Joel M., Farese, Robert V., Walther, Tobias C.

“…Lipid droplets (LDs) form in the endoplasmic reticulum by phase separation of neutral lipids. This process is facilitated by the seipin protein complex, which…”
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Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images by Kreshuk, Anna, Straehle, Christoph N, Sommer, Christoph, Koethe, Ullrich, Cantoni, Marco, Knott, Graham, Hamprecht, Fred A

“…We describe a protocol for fully automated detection and segmentation of asymmetric, presumed excitatory, synapses in serial electron microscopy images of the…”
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End-to-End Learning of Decision Trees and Forests by Hehn, Thomas M., Kooij, Julian F. P., Hamprecht, Fred A.

“…Conventional decision trees have a number of favorable properties, including a small computational footprint, interpretability, and the ability to learn from…”
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Graphical model for joint segmentation and tracking of multiple dividing cells by Schiegg, Martin, Hanslovsky, Philipp, Haubold, Carsten, Koethe, Ullrich, Hufnagel, Lars, Hamprecht, Fred A

“…To gain fundamental insight into the development of embryos, biologists seek to understand the fate of each and every embryonic cell. For the generation of…”
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A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data by Menze, Bjoern H, Kelm, B Michael, Masuch, Ralf, Himmelreich, Uwe, Bachert, Peter, Petrich, Wolfgang, Hamprecht, Fred A

“…Regularized regression methods such as principal component or partial least squares regression perform well in learning tasks on high dimensional spectral…”
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Automated detection of synapses in serial section transmission electron microscopy image stacks by Kreshuk, Anna, Koethe, Ullrich, Pax, Elizabeth, Bock, Davi D, Hamprecht, Fred A

“…We describe a method for fully automated detection of chemical synapses in serial electron microscopy images with highly anisotropic axial and lateral…”
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Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues by Calì, Corrado, Baghabra, Jumana, Boges, Daniya J., Holst, Glendon R., Kreshuk, Anna, Hamprecht, Fred A., Srinivasan, Madhusudhanan, Lehväslaiho, Heikki, Magistretti, Pierre J.

“…ABSTRACT Advances in the application of electron microscopy (EM) to serial imaging are opening doors to new ways of analyzing cellular structure. New and…”
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Importance of pre-enrichment for detection of third-generation cephalosporin-resistant Enterobacteriaceae (3GCREB) from rectal swabs by Jazmati, N., Jazmati, T., Hamprecht, A.

“…Screening for multidrug-resistant Enterobacteriaceae is performed in many institutions as part of infection control measures. However, the sensitivity of…”
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Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons by Maco, Bohumil, Holtmaat, Anthony, Cantoni, Marco, Kreshuk, Anna, Straehle, Christoph N, Hamprecht, Fred A, Knott, Graham W

“…Correlating in vivo imaging of neurons and their synaptic connections with electron microscopy combines dynamic and ultrastructural information. Here we…”
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Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana by Schütz, Lilli Marie, Louveaux, Marion, Vilches Barro, Amaya, Bouziri, Sami, Cerrone, Lorenzo, Wolny, Adrian, Kreshuk, Anna, Hamprecht, Fred A, Maizel, Alexis

“…Abstract Lateral root formation determines to a large extent the ability of plants to forage their environment and thus their growth. In Arabidopsis thaliana…”
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Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites by Maco, Bohumil, Cantoni, Marco, Holtmaat, Anthony, Kreshuk, Anna, Hamprecht, Fred A, Knott, Graham W

“…The authors describe an approach that can be used after in vivo imaging of dendrites and axons in adult mouse brains to prepare and image fluorescent…”
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