Search Results - "Hamilton, Matthew B."

Plasticity drives the trait variation of a foundation marsh species migrating into coastal forests with sea‐level rise by Kottler, Ezra J., Hamilton, Matthew B., Gedan, Keryn B.

“…Climate‐driven ecosystem shifts occur through turnover in the foundation species which structure the landscape. Therefore, to predict the fate of areas…”
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Critically Small Contemporaneous Effective Population Sizes Estimated for Stocks of the African Bonytongue in Western Africa by Hurtado, Luis A., Mateos, Mariana, Caballero, Isabel C., Oladimeji, Tofunmi E., Adite, Alphonse, Awodiran, Michael O., Winemiller, Kirk O., Hamilton, Matthew B.

“…Inland capture fisheries play a critical role in supporting food security and livelihoods in Africa. Therefore, it is important to evaluate the genetic health…”
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Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites by Hamilton, M B, Pincus, E L, Di Fiore, A, Fleischer, R C

“…Microsatellite loci are highly informative genetic markers useful for population genetic studies, linkage mapping and parentage determination. Methods to…”
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Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms by Soria-Hernanz, David F, Fiz-Palacios, Omar, Braverman, John M, Hamilton, Matthew B

“…Differences in plant annual/perennial habit are hypothesized to cause a generation time effect on divergence rates. Previous studies that compared rates of…”
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speed‐ne: Software to simulate and estimate genetic effective population size (Ne) from linkage disequilibrium observed in single samples by Hamilton, Matthew B., Tartakovsky, Maria, Battocletti, Amy

“…The genetic effective population size, Ne, can be estimated from the average gametic disequilibrium (r2^) between pairs of loci, but such estimates require…”
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Comparing Relative Rates of Pollen and Seed Gene Flow in the Island Model Using Nuclear and Organelle Measures of Population Structure by Hamilton, Matthew B, Miller, Judith R

“…We describe a method for comparing nuclear and organelle population differentiation (F(ST)) in seed plants to test the hypothesis that pollen and seed gene…”
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Putting the genes into community genetics by Wimp, Gina M., Tomasula, Jewel, Hamilton, Matthew B.

“…As part of the long‐term fusion of evolutionary biology and ecology (Ford, 1964), the field of community genetics has made tremendous progress in describing…”
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Sea level rise-induced habitat loss does not alter effective migration rate for the salt marsh insect Tumidagena minuta due to large genetic effective population size by Maguire, Billie, Tomasula, Jewel, Rippel, Tyler, Wimp, Gina M., Hamilton, Matthew B.

“…Introduction As anthropogenic change alters and fragments habitats, it is apparent that evolutionary change can co-occur with ecological change, though the…”
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Patterns of Substitution Rate Variation at Many Nuclear Loci in Two Species Trios in the Brassicaceae Partitioned with ANOVA by Braverman, John M., Hamilton, Matthew B., Johnson, Brent A.

“…There are marked variations among loci and among lineages in rates of nucleotide substitution. The generation time hypothesis (GTH) is a neutral explanation…”
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FST and QST Under Neutrality by Miller, Judith R, Wood, Bryan P, Hamilton, Matthew B

“…A commonly used test for natural selection has been to compare population differentiation for neutral molecular loci estimated by F ST and for the additive…”
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Properties of Weir and Cockerham's Fst estimators and associated bootstrap confidence intervals by Leviyang, Sivan, Hamilton, Matthew B

“…Weir and Cockerham introduced single locus and multiloci F(st) estimators for the parameter θ. These estimators are commonly used, but little beyond their bias…”
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Identification and Characterization of Microsatellite Loci in the Tuliptree, Liriodendron tulipifera (Magnoliaceae) by Gutiérrez-Ozuna, Ricardo, Hamilton, Matthew B

“…Premise of the study: Twenty-three polymorphic microsatellite loci (simple sequence repeats) were identified and characterized for Liriodendron tulipifera…”
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Hierarchical components of genetic variation at a species boundary: population structure in two sympatric varieties of Lupinus microcarpus (Leguminosae) by DRUMMOND, CHRISTOPHER S, HAMILTON, MATTHEW B

“…Lupinus microcarpus is a self-compatible annual plant that forms a species complex of morphologically variable but indeterminate varieties. In order to examine…”
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Properties of Weir and Cockerham’s estimators and associated bootstrap confidence intervals by Leviyang, Sivan, Hamilton, Matthew B.

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Properties of Weir and Cockerham’s F s t estimators and associated bootstrap confidence intervals by Leviyang, Sivan, Hamilton, Matthew B.

“…Weir and Cockerham introduced single locus and multiloci F s t estimators for the parameter θ . These estimators are commonly used, but little beyond their…”
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A Single-Sampling Hair Trap for Mesocarnivores by Pauli, Jonathan N, Hamilton, Matthew B, Crain, Edward B, Buskirk, Steven W

“…Although techniques to analyze and quantify DNA-based data have progressed, methods to noninvasively collect samples lag behind. Samples are generally…”
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Tropical tree gene flow and seed dispersal by Hamilton, Matthew B

“…In tropical forests, trees provide habitats and environmental conditions that support thousands of species. However, deforestation creates a mosaic landscape…”
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Parallel Rate Heterogeneity in Chloroplast and Mitochondrial Genomes of Brazil Nut Trees (Lecythidaceae) Is Consistent with Lineage Effects by Soria-Hernanz, David F., Braverman, John M., Hamilton, Matthew B.

“…We investigated whether relative rates of divergence were correlated between the mitochondrial and chloroplast genomes as expected under lineage effects or…”
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Steady state of homozygosity and Gst for the island model by Rottenstreich, Sivan, Miller, Judith R, Hamilton, Matthew B

“…We examine homozygosity and G(st) for a subdivided population governed by the finite island model. Assuming an infinite allele model and strong mutation we…”
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impact of microsatellite electromorph size homoplasy on multilocus population structure estimates in a tropical tree (Corythophora alta) and an anadromous fish (Morone saxatilis) by Adams, R.I, Brown, K.M, Hamilton, M.B

“…Microsatellite allelic states are determined by electrophoretic sizing of polymerase chain reaction fragments to define electromorphs. Numerous studies have…”
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