Search Results - "Ham, C J"

Nonlinear Stability and Saturation of Ballooning Modes in Tokamaks by Ham, C J, Cowley, S C, Brochard, G, Wilson, H R

“…The theory of tokamak stability to nonlinear "ballooning" displacements of elliptical magnetic flux tubes is presented. Above a critical pressure profile the…”
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A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network by Leal Valentim, Felipe, Mourik, Simon van, Posé, David, Kim, Min C, Schmid, Markus, van Ham, Roeland C H J, Busscher, Marco, Sanchez-Perez, Gabino F, Molenaar, Jaap, Angenent, Gerco C, Immink, Richard G H, van Dijk, Aalt D J

“…Various environmental signals integrate into a network of floral regulatory genes leading to the final decision on when to flower. Although a wealth of…”
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Bayesian Markov Random Field analysis for protein function prediction based on network data by Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Bink, Marco C A M, van Ham, Roeland C H J, ter Braak, Cajo J F

“…Inference of protein functions is one of the most important aims of modern biology. To fully exploit the large volumes of genomic data typically produced in…”
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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis by Goodwin, Stephen B, M'barek, Sarrah Ben, Dhillon, Braham, Wittenberg, Alexander H J, Crane, Charles F, Hane, James K, Foster, Andrew J, Van der Lee, Theo A J, Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canché, Blondy, Churchill, Alice C L, Conde-Ferràez, Laura, Cools, Hans J, Coutinho, Pedro M, Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C, van Ham, Roeland C H J, Hammond-Kosack, Kim E, Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K, Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P H, Ponomarenko, Alisa, Rudd, Jason J, Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J, Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F F, Tu, Hank, de Vries, Ronald P, Waalwijk, Cees, Ware, Sarah B, Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P, Grigoriev, Igor V, Kema, Gert H J

“…The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici) causes septoria tritici blotch, a disease that greatly reduces the…”
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The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry by de Wit, Pierre J G M, van der Burgt, Ate, Ökmen, Bilal, Stergiopoulos, Ioannis, Abd-Elsalam, Kamel A, Aerts, Andrea L, Bahkali, Ali H, Beenen, Henriek G, Chettri, Pranav, Cox, Murray P, Datema, Erwin, de Vries, Ronald P, Dhillon, Braham, Ganley, Austen R, Griffiths, Scott A, Guo, Yanan, Hamelin, Richard C, Henrissat, Bernard, Kabir, M Shahjahan, Jashni, Mansoor Karimi, Kema, Gert, Klaubauf, Sylvia, Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Mehrabi, Rahim, Ohm, Robin A, Owen, Timothy J, Salamov, Asaf, Schwelm, Arne, Schijlen, Elio, Sun, Hui, van den Burg, Harrold A, van Ham, Roeland C H J, Zhang, Shuguang, Goodwin, Stephen B, Grigoriev, Igor V, Collemare, Jérôme, Bradshaw, Rosie E

“…We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens Cladosporium fulvum (Cfu) (syn. Passalora fulva) and Dothistroma septosporum…”
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Mutational robustness of gene regulatory networks by van Dijk, Aalt D J, van Mourik, Simon, van Ham, Roeland C H J

“…Mutational robustness of gene regulatory networks refers to their ability to generate constant biological output upon mutations that change network structure…”
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Predicting the impact of alternative splicing on plant MADS domain protein function by Severing, Edouard I, van Dijk, Aalt D J, Morabito, Giuseppa, Busscher-Lange, Jacqueline, Immink, Richard G H, van Ham, Roeland C H J

“…Several genome-wide studies demonstrated that alternative splicing (AS) significantly increases the transcriptome complexity in plants. However, the impact of…”
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Reductive Genome Evolution in Buchnera aphidicola by Roeland C. H. J. van Ham, Kamerbeek, Judith, Palacios, Carmen, Rausell, Carolina, Abascal, Federico, Bastolla, Ugo, Fernández, Jose M., Jiménez, Luis, Postigo, Marina, Silva, Francisco J., Tamames, Javier, Viguera, Enrique, Latorre, Amparo, Valencia, Alfonso, Morán, Federico, Moya, Andrés

“…We have sequenced the genome of the intracellular symbiont Buchnera aphidicola from the aphid Baizongia pistacea. This strain diverged 80-150 million years ago…”
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Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function by Villegas-Morcillo, Amelia, Makrodimitris, Stavros, van Ham, Roeland C H J, Gomez, Angel M, Sanchez, Victoria, Reinders, Marcel J T

“…Abstract Motivation Protein function prediction is a difficult bioinformatics problem. Many recent methods use deep neural networks to learn complex sequence…”
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Using a semi‐conductor sequencing‐based panel for genotyping of HPV‐positive and HPV‐negative oropharyngeal cancer: a retrospective pilot study by Ham, J.C., Tops, B.B.J., Driessen, C.M.L., van Raaij, A.W.M., Slootweg, P.J., Melchers, W.J.G., Ligtenberg, M.J.L., van Herpen, C.M.L.

“…Objectives The aim of this study was to assess the feasibility of testing actionable mutations in small amounts of formalin‐fixed paraffin‐embedded material in…”
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Periodic orbit theory in acoustics : spectral fluctuations in circular and annular waveguides by WRIGHT, M. C. M, HAM, C. J

“…Formulas based on the theory of Weyl are widely used to obtain the average number of modes at or below a given frequency in acoustic and vibrational…”
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Development of Containerization: Success Through Vision, Drive and Technology by van Ham, J. C, Rijsenbrij, J. C

“…This book deals with the revolution of containerization, a breakthrough in maritime transport. Until World War II, maritime transport and transshipment of…”
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Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction by van Dijk, Aalt D J, Morabito, Giuseppa, Fiers, Martijn, van Ham, Roeland C H J, Angenent, Gerco C, Immink, Richard G H

“…Protein sequences encompass tertiary structures and contain information about specific molecular interactions, which in turn determine biological functions of…”
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Metric learning on expression data for gene function prediction by Makrodimitris, Stavros, Reinders, Marcel J T, van Ham, Roeland C H J

“…Abstract Motivation Co-expression of two genes across different conditions is indicative of their involvement in the same biological process. However, when…”
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Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index by Mihaleva, V. V., Verhoeven, H. A., de Vos, R. C. H., Hall, R. D., van Ham, R. C. H. J.

“…Motivation: Matching both the retention index (RI) and the mass spectrum of an unknown compound against a mass spectral reference library provides strong…”
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Predicting sub-Golgi localization of type II membrane proteins by van Dijk, A. D. J., Bosch, D., ter Braak, C. J. F., van der Krol, A. R., van Ham, R. C. H. J.

“…Motivation: Recent research underlines the importance of finegrained knowledge on protein localization. In particular, subcompartmental localization in the…”
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The quest for orthologs: finding the corresponding gene across genomes by Kuzniar, Arnold, van Ham, Roeland C.H.J, Pongor, Sándor, Leunissen, Jack A.M

“…Orthology is a key evolutionary concept in many areas of genomic research. It provides a framework for subjects as diverse as the evolution of genomes, gene…”
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Electrochemical and Spectroscopic Study of Mononuclear Ruthenium Water Oxidation Catalysts: A Combined Experimental and Theoretical Investigation by de Ruiter, J. M, Purchase, R. L, Monti, A, van der Ham, C. J. M, Gullo, M. P, Joya, K. S, D’Angelantonio, M, Barbieri, A, Hetterscheid, D. G. H, de Groot, H. J. M, Buda, F

“…One of the key challenges in designing light-driven artificial photosynthesis devices is the optimization of the catalytic water oxidation process. For this…”
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Evolution of the Leucine Gene Cluster in Buchnera aphidicola: Insights from Chromosomal Versions of the Cluster by SABATER-MUNOZ, Beatriz, VAN HAM, Roeland C. H. J, MOYA, Andrés, SILVA, Francisco J, LATORRE, Amparo

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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A Comparison of Global Sensitivity Analysis Methods for Explainable AI With an Application in Genomic Prediction by Stein, Bas Van, Raponi, Elena, Sadeghi, Zahra, Bouman, Niek, Van Ham, Roeland C. H. J., Back, Thomas

“…Explainable Artificial Intelligence (XAI) is an increasingly important field of research required to bring AI to the next level in real-world applications…”
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