Search Results - "Halsey, Michaela K"

Comparison of genetic variation between rare and common congeners of Dipodomys with estimates of contemporary and historical effective population size by Halsey, Michaela K, Stuhler, John D, Bayona-Vásquez, Natalia J, Platt, Roy N, Goetze, Jim R, Martin, Robert E, Matocha, Kenneth G, Bradley, Robert D, Stevens, Richard D, Ray, David A

“…Species with low effective population sizes are at greater risk of extinction because of reduced genetic diversity. Such species are more vulnerable to chance…”
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Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths by Ray, David A, Grimshaw, Jenna R, Halsey, Michaela K, Korstian, Jennifer M, Osmanski, Austin B, Sullivan, Kevin A M, Wolf, Kristen A, Reddy, Harsith, Foley, Nicole, Stevens, Richard D, Knisbacher, Binyamin A, Levy, Orr, Counterman, Brian, Edelman, Nathaniel B, Mallet, James

“…Abstract Transposable elements (TEs) play major roles in the evolution of genome structure and function. However, because of their repetitive nature, they are…”
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Evolution of the ancestral mammalian karyotype and syntenic regions by Damas, Joana, Corbo, Marco, Kim, Jaebum, Turner-Maier, Jason, Farré, Marta, Larkin, Denis M, Ryder, Oliver A, Steiner, Cynthia, Houck, Marlys L, Hall, Shaune, Shiue, Lily, Thomas, Stephen, Swale, Thomas, Daly, Mark, Korlach, Jonas, Uliano-Silva, Marcela, Mazzoni, Camila J, Birren, Bruce W, Genereux, Diane P, Johnson, Jeremy, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Nweeia, Martin T, Johnson, Rebecca N, Lewin, Harris A

“…Decrypting the rearrangements that drive mammalian chromosome evolution is critical to understanding the molecular bases of speciation, adaptation, and disease…”
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A genomic timescale for placental mammal evolution by Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J

“…The precise pattern and timing of speciation events that gave rise to all living placental mammals remain controversial. We provide a comprehensive…”
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Mammalian evolution of human cis-regulatory elements and transcription factor binding sites by Andrews, Gregory, Fan, Kaili, Pratt, Henry E, Phalke, Nishigandha, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Gazal, Steven, Moore, Jill E, Weng, Zhiping

“…Understanding the regulatory landscape of the human genome is a long-standing objective of modern biology. Using the reference-free alignment across 241…”
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Relating enhancer genetic variation across mammals to complex phenotypes using machine learning by Kaplow, Irene M, Lawler, Alyssa J, Schäffer, Daniel E, Srinivasan, Chaitanya, Sestili, Heather H, Wirthlin, Morgan E, Phan, BaDoi N, Prasad, Kavya, Brown, Ashley R, Zhang, Xiaomeng, Foley, Kathleen, Genereux, Diane P, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Meyer, Wynn K, Pfenning, Andreas R

“…Protein-coding differences between species often fail to explain phenotypic diversity, suggesting the involvement of genomic elements that regulate gene…”
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Three-dimensional genome rewiring in loci with human accelerated regions by Keough, Kathleen C, Whalen, Sean, Inoue, Fumitaka, Przytycki, Pawel F, Fair, Tyler, Deng, Chengyu, Steyert, Marilyn, Ryu, Hane, Lindblad-Toh, Kerstin, Karlsson, Elinor, Nowakowski, Tomasz, Ahituv, Nadav, Pollen, Alex, Pollard, Katherine S

“…Human accelerated regions (HARs) are conserved genomic loci that evolved at an accelerated rate in the human lineage and may underlie human-specific traits. We…”
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The functional and evolutionary impacts of human-specific deletions in conserved elements by Xue, James R, Mackay-Smith, Ava, Mouri, Kousuke, Garcia, Meilin Fernandez, Dong, Michael X, Akers, Jared F, Noble, Mark, Li, Xue, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Noonan, James P, Capellini, Terence D, Brennand, Kristen J, Tewhey, Ryan, Sabeti, Pardis C, Reilly, Steven K

“…Conserved genomic sequences disrupted in humans may underlie uniquely human phenotypic traits. We identified and characterized 10,032 human-specific conserved…”
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Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia by Paulat, Nicole S, Storer, Jessica M, Moreno-Santillán, Diana D, Osmanski, Austin B, Sullivan, Kevin A M, Grimshaw, Jenna R, Korstian, Jennifer, Halsey, Michaela, Garcia, Carlos J, Crookshanks, Claudia, Roberts, Jaquelyn, Smit, Arian F A, Hubley, Robert, Rosen, Jeb, Teeling, Emma C, Vernes, Sonja C, Myers, Eugene, Pippel, Martin, Brown, Thomas, Hiller, Michael, Rojas, Danny, Dávalos, Liliana M, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Ray, David A

“…Abstract Horizontal transfer of transposable elements (TEs) is an important mechanism contributing to genetic diversity and innovation. Bats (order Chiroptera)…”
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Using evolutionary constraint to define novel candidate driver genes in medulloblastoma by Roy, Ananya, Sakthikumar, Sharadha, Kozyrev, Sergey V, Nordin, Jessika, Pensch, Raphaela, Mäkeläinen, Suvi, Pettersson, Mats, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Forsberg-Nilsson, Karin

“…Current knowledge of cancer genomics remains biased against noncoding mutations. To systematically search for regulatory noncoding mutations, we assessed…”
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Updated distribution of the Texas kangaroo rat (Dipodomys elator) and patterns of rodent species associations from county road surveys in Texas by Stuhler, John D., Halsey, Michaela K., Goetze, Jim R., Bradley, Robert D., Ray, David A., Stevens, Richard D.

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