Search Results - "Hafezqorani, Saber"

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 by Nip, Ka Ming, Hafezqorani, Saber, Gagalova, Kristina K., Chiu, Readman, Yang, Chen, Warren, René L., Birol, Inanc

“…Long-read sequencing technologies have improved significantly since their emergence. Their read lengths, potentially spanning entire transcripts, is…”
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Modeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulation by HafezQorani, Saber, Lafzi, Atefeh, de Bruin, Ruben G, van Zonneveld, Anton Jan, van der Veer, Eric P, Son, Yeşim Aydın, Kazan, Hilal

“…Recent studies show that RNA-binding proteins (RBPs) and microRNAs (miRNAs) function in coordination with each other to control post-transcriptional regulation…”
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Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data by Hafezqorani, Saber, Yang, Chen, Lo, Theodora, Nip, Ka Ming, Warren, René L, Birol, Inanc

“…Abstract Background Compared with second-generation sequencing technologies, third-generation single-molecule RNA sequencing has unprecedented advantages; the…”
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Predicting clinical outcomes in neuroblastoma with genomic data integration by Baali, Ilyes, Acar, D Alp Emre, Aderinwale, Tunde W, HafezQorani, Saber, Kazan, Hilal

“…Neuroblastoma is a heterogeneous disease with diverse clinical outcomes. Current risk group models require improvement as patients within the same risk group…”
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RBPSponge: genome-wide identification of lncRNAs that sponge RBPs by HafezQorani, Saber, Houdjedj, Aissa, Arici, Mehmet, Said, Abdesselam, Kazan, Hilal

“…Abstract Summary Long non-coding RNAs (lncRNAs) can act as molecular sponge or decoys for an RNA-binding protein (RBP) through their RBP-binding sites, thereby…”
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Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim by Yang, Chen, Lo, Theodora, Nip, Ka Ming, Hafezqorani, Saber, Warren, René L, Birol, Inanc

“…Abstract Background Nanopore sequencing is crucial to metagenomic studies as its kilobase-long reads can contribute to resolving genomic structural differences…”
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RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes by Stephenson, Maria, Nip, Ka Ming, HafezQorani, Saber, Gagalova, Kristina K, Yang, Chen, Warren, René L, Birol, Inanc

“…Abstract Recent advances in single-cell RNA sequencing technologies have made detection of transcripts in single cells possible. The level of resolution…”
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