Search Results - "Haber, James E"
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1
DNA Repair: The Search for Homology
Published in BioEssays (01-05-2018)“…The repair of chromosomal double‐strand breaks (DSBs) by homologous recombination is essential to maintain genome integrity. The key step in DSB repair is the…”
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The democratization of gene editing: Insights from site-specific cleavage and double-strand break repair
Published in DNA repair (01-08-2016)“…DNA double-strand breaks (DSBs) are dangerous lesions that if not properly repaired can lead to genomic change or cell death. Organisms have developed several…”
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3
Checkpoint Responses to DNA Double-Strand Breaks
Published in Annual review of biochemistry (20-06-2020)“…Cells confront DNA damage in every cell cycle. Among the most deleterious types of DNA damage are DNA double-strand breaks (DSBs), which can cause cell…”
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Homology Requirements and Competition between Gene Conversion and Break-Induced Replication during Double-Strand Break Repair
Published in Molecular cell (02-02-2017)“…Saccharomyces cerevisiae mating-type switching is initiated by a double-strand break (DSB) at MATa, leaving one cut end perfectly homologous to the HMLα donor,…”
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5
Loop extrusion as a mechanism for formation of DNA damage repair foci
Published in Nature (London) (25-02-2021)“…The repair of DNA double-strand breaks (DSBs) is essential for safeguarding genome integrity. When a DSB forms, the PI3K-related ATM kinase rapidly triggers…”
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Mutations Arising During Repair of Chromosome Breaks
Published in Annual review of genetics (01-01-2012)“…Mutations stimulate evolutionary change and lead to birth defects and cancer in humans as well as to antibiotic resistance in bacteria. According to the…”
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Repair of a Site-Specific DNA Cleavage: Old-School Lessons for Cas9-Mediated Gene Editing
Published in ACS chemical biology (16-02-2018)“…CRISPR/Cas9-mediated gene editing may involve nonhomologous end-joining to create various insertion/deletions (indels) or may employ homologous recombination…”
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CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles
Published in Proceedings of the National Academy of Sciences - PNAS (27-02-2018)“…Harnessing CRISPR-Cas9 technology provides an unprecedented ability to modify genomic loci via DNA double-strand break (DSB) induction and repair. We analyzed…”
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Mechanisms restraining break‐induced replication at two‐ended DNA double‐strand breaks
Published in The EMBO journal (17-05-2021)“…DNA synthesis during homologous recombination is highly mutagenic and prone to template switches. Two‐ended DNA double‐strand breaks (DSBs) are usually…”
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Deciphering the DNA Damage Response
Published in Cell (10-09-2015)“…This year’s Albert Lasker Basic Medical Research Award honors Evelyn Witkin and Stephen J. Elledge, two pioneers in elucidating the DNA damage response, whose…”
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PP2C phosphatases promote autophagy by dephosphorylation of the Atg1 complex
Published in Proceedings of the National Academy of Sciences - PNAS (29-01-2019)“…Macroautophagy is orchestrated by the Atg1-Atg13 complex in budding yeast. Under nutrient-rich conditions, Atg13 is maintained in a hyperphosphorylated state…”
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Repair of mismatched templates during Rad51-dependent Break-Induced Replication
Published in PLoS genetics (02-09-2022)“…Using budding yeast, we have studied Rad51-dependent break-induced replication (BIR), where the invading 3’ end of a site-specific double-strand break (DSB)…”
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Break-induced replication and telomerase-independent telomere maintenance require Pol32
Published in Nature (London) (16-08-2007)“…Break-induced replication (BIR) is an efficient homologous recombination process to initiate DNA replication when only one end of a chromosome double-strand…”
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14
Break-Induced Replication Repair of Damaged Forks Induces Genomic Duplications in Human Cells
Published in Science (American Association for the Advancement of Science) (03-01-2014)“…In budding yeast, one-ended DNA double-strand breaks (DSBs) and damaged replication forks are repaired by break-induced replication (BIR), a homologous…”
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Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae
Published in Molecular cell (21-08-2014)“…Although repair of double-strand breaks (DSBs) by gene conversion is the most accurate way to repair such lesions, in budding yeast there is a 1,000-fold…”
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Single-strand template repair: key insights to increase the efficiency of gene editing
Published in Current genetics (01-10-2021)“…DNA double-strand breaks (DSBs) pose a serious hazard for the stability of the genome. CRISPR-Cas9-mediated gene editing intentionally creates a site-specific…”
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Structure-forming CAG/CTG repeats interfere with gap repair to cause repeat expansions and chromosome breaks
Published in Nature communications (29-04-2023)“…Expanded CAG/CTG repeats are sites of DNA damage, leading to repeat length changes. Homologous recombination (HR) is one cause of repeat instability and we…”
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TOPping Off Meiosis
Published in Molecular cell (19-02-2015)“…Double-strand breaks (DSBs) threaten chromosome integrity. The most accurate repair of DSBs is by homologous recombination (HR), catalyzed by recombination…”
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Histone chaperones: an escort network regulating histone traffic
Published in Nature structural & molecular biology (01-11-2007)“…In eukaryotes, DNA is organized into chromatin in a dynamic manner that enables it to be accessed for processes such as transcription and repair. Histones, the…”
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Evidence that DNA polymerase δ contributes to initiating leading strand DNA replication in Saccharomyces cerevisiae
Published in Nature communications (27-02-2018)“…To investigate nuclear DNA replication enzymology in vivo, we have studied Saccharomyces cerevisiae strains containing a pol2-16 mutation that inactivates the…”
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