Search Results - "HULSEGGE, Ina"

Selection and Drift: A Comparison between Historic and Recent Dutch Friesian Cattle and Recent Holstein Friesian Using WGS Data by Hulsegge, Ina, Oldenbroek, Kor, Bouwman, Aniek, Veerkamp, Roel, Windig, Jack

“…Over the last century, genetic diversity in many cattle breeds has been affected by the replacement of traditional local breeds with just a few milk-producing…”
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Retriever and Pointer: Software to Evaluate Inbreeding and Genetic Management in Captive Populations by Windig, Jack J, Hulsegge, Ina

“…The Retriever and Pointer software has been developed for genetic management of (small) captive populations The Retriever program uses as input pedigree data…”
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Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs by Hulsegge, Ina, Calus, Mario, Hoving-Bolink, Rita, Lopes, Marcos, Megens, Hendrik-Jan, Oldenbroek, Kor

“…The pig breeding industry has undergone a large number of mergers in the past decades. Various commercial lines were merged or discontinued, which is expected…”
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Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets by Schokker, Dirkjan, Hulsegge, Ina, Woelders, Henri, Rebel, Johanna M J

“…Immediately after birth, the porcine intestine rapidly develops morphologically, functionally, and immunologically. The jejunum, the second part of the small…”
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Continuous real-time cow identification by reading ear tags from live-stream video by Bastiaansen, John W.M., Hulsegge, Ina, Schokker, Dirkjan, Ellen, Esther D., Klandermans, Bert, Taghavi, Marjaneh, Kamphuis, Claudia

“…In precision dairy farming there is a need for continuous and real-time availability of data on cows and systems. Data collection using sensors is becoming…”
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Lying characteristics as determinants for space requirements in pigs by Ekkel, E.Dinand, Spoolder, Hans A.M, Hulsegge, Ina, Hopster, Hans

“…An experiment was carried out to study the lying postures, space occupation and percentage of space-sharing (as a consequence of huddling behaviour) in pigs…”
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Meta-analysis of chicken--salmonella infection experiments by Te Pas, Marinus F W, Hulsegge, Ina, Schokker, Dirkjan, Smits, Mari A, Fife, Mark, Zoorob, Rima, Endale, Marie-Laure, Rebel, Johanna M J

“…Chicken meat and eggs can be a source of human zoonotic pathogens, especially Salmonella species. These food items contain a potential hazard for humans…”
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Genomics Applied to Conservation of Genetic Diversity in Dutch Livestock by Hulsegge, Ina

“…Conserving genetic diversity is essential for the sustainability of populations. In livestock, the amount of genetic diversity should be large enough to enable…”
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genomeprofile: Unveiling the genomic profile for livestock breeding through comprehensive SNP array‐based genotyping by Hulsegge, Ina, Bouwman, Aniek C., Derks, Martijn F. L.

“…In livestock breeding, single nucleotide polymorphism arrays have become a cornerstone of modern livestock breeding. SNP arrays facilitate the identification…”
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Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle by Daetwyler, Hans D, Capitan, Aurélien, Pausch, Hubert, Stothard, Paul, van Binsbergen, Rianne, Brøndum, Rasmus F, Liao, Xiaoping, Djari, Anis, Rodriguez, Sabrina C, Grohs, Cécile, Esquerré, Diane, Bouchez, Olivier, Rossignol, Marie-Noëlle, Klopp, Christophe, Rocha, Dominique, Fritz, Sébastien, Eggen, André, Bowman, Phil J, Coote, David, Chamberlain, Amanda J, Anderson, Charlotte, VanTassell, Curt P, Hulsegge, Ina, Goddard, Mike E, Guldbrandtsen, Bernt, Lund, Mogens S, Veerkamp, Roel F, Boichard, Didier A, Fries, Ruedi, Hayes, Ben J

“…Ben Hayes and colleagues report the whole-genome sequencing of 234 bulls as phase one of the 1000 bull genomes project. They identify 28.3 million variants in…”
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Development of a genetic tool for determining breed purity of cattle by Hulsegge, Ina, Schoon, Mira, Windig, Jack, Neuteboom, Marjolein, Hiemstra, Sipke Joost, Schurink, Anouk

“…•Only a small set of SNPs, when accurately chosen, was needed to differentiate among the Dutch local cattle breeds.•The reference population of purebred…”
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Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs1 by Mollenhorst, Herman, Ducro, Bart J, De Greef, Karel H, Hulsegge, Ina, Kamphuis, Claudia

“…Abstract In pig production, efficiency is benefiting from uniform growth in pens resulting in single deliveries from a pen of possibly all animals in the…”
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Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs 1 by Mollenhorst, Herman, Ducro, Bart J, de Greef, Karel H, Hulsegge, Ina, Kamphuis, Claudia

“…In pig production, efficiency is benefiting from uniform growth in pens resulting in single deliveries from a pen of possibly all animals in the targeted…”
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Analysis of the real EADGENE data set : Multivariate approaches and post analysis (Open Access publication) by SØRENSEN, Peter, BONNET, Agnès, HULSEGGE, Ina, JAFFREZIC, Florence, JENSEN, Kirsty, JIANG, Li, DE KONING, Dirk-Jan, LE CAO, Kim-Anh, NIE, Haisheng, PETZL, Wolfram, POOL, Marco H, ROBERT-GRANIE, Christèle, BUITENHUIS, Bart, SAN CRISTOBAL, Magali, LUND, Mogens Sandø, VAN SCHOTHORST, Evert M, SCHUBERTH, Hans-Joachim, SEYFERT, Hans-Martin, TOSSER-KLOPP, Gwenola, WADDINGTON, David, WATSON, Michael, YANG, Wei, ZERBE, Holm, CLOSSET, Rodrigue, DEJEAN, Sébastien, DELMAS, Céline, DUVAL, Mylène, GLASS, Liz, HEDEGAARD, Jakob, HORNSHØJ, Henrik

“…The aim of this paper was to describe, and when possible compare, the multivariate methods used by the participants in the EADGENE WP1.4 workshop. The first…”
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Analysis of a simulated microarray dataset : Comparison of methods for data normalisation and detection of differential expression (Open Access publication) by WATSON, Michael, PEREZ-ALEGRE, Monica, JIMENEZ-MARIN, Angeles, LAVRIC, Miha, LE CAO, Kim-Anh, MAROT, Guillemette, MOUZAKI, Daphné, POOL, Marco H, ROBERT-GRANIE, Christèle, SAN CRISTOBAL, Magali, TOSSER-KLOPP, Gwenola, WADDINGTON, David, BARON, Michael Denis, DE KONING, Dirk-Jan, DELMAS, Céline, DOVC, Péter, DUVAL, Mylène, FOULLEY, Jean-Louis, GARRIDO-PAVON, Juan José, HULSEGGE, Ina, JAFFREZIC, Florence

“…Microarrays allow researchers to measure the expression of thousands of genes in a single experiment. Before statistical comparisons can be made, the data must…”
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The EADGENE Microarray Data Analysis Workshop (Open Access publication) by DE KONING, Dirk-Jan, JAFFREZIC, Florence, JIANG, Li, SØRENSEN, Peter, MAROT, Guillemette, DELMAS, Céline, LE CAO, Kim-Anh, SAN CRISTOBAL, Magali, BARON, Michael D, MALINVERNI, Roberto, STELLA, Alessandra, BRUNNER, Ronald M, LUND, Mogens Sandø, SEYFERT, Hans-Martin, JENSEN, Kirsty, MOUZAKI, Daphne, WADDINGTON, David, JIMENEZ-MARIN, Angeles, PEREZ-ALEGRE, Monica, PEREZ-REINADO, Eva, CLOSSET, Rodrigue, DETILLEUX, Johanne C, DOVC, Peter, WATSON, Michael, LAVRIC, Miha, NIE, Haisheng, JANSS, Luc, CHANNING, Caroline, HULSEGGE, Ina, POOL, Marco H, BUITENHUIS, Bart, HEDEGAARD, Jakob, HORNSHØJ, Henrik

“…Microarray analyses have become an important tool in animal genomics. While their use is becoming widespread, there is still a lot of ongoing research…”
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Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset by Calus, Mario P.L., Vandenplas, Jérémie, Hulsegge, Ina, Borg, Randy, Henshall, John M., Hawken, Rachel

“…Broiler breeding programs rely on crossbreeding. With genomic selection, widespread use of crossbred performance in breeding programs comes within reach…”
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Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle by van Binsbergen, Rianne, Bink, Marco Cam, Calus, Mario Pl, van Eeuwijk, Fred A, Hayes, Ben J, Hulsegge, Ina, Veerkamp, Roel F

“…The use of whole-genome sequence data can lead to higher accuracy in genome-wide association studies and genomic predictions. However, to benefit from…”
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Classifying aneuploidy in genotype intensity data using deep learning by Bouwman, Aniek C, Hulsegge, Ina, Hawken, Rachel J, Henshall, John M, Veerkamp, Roel F, Schokker, Dirkjan, Kamphuis, Claudia

“…Aneuploidy is the loss or gain of one or more chromosomes. Although it is a rare phenomenon in liveborn individuals, it is observed in livestock breeding…”
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A time-series approach for clustering farms based on slaughterhouse health aberration data by Hulsegge, B., de Greef, K.H.

“…•Characteristic-based clustering is able to cluster time series of meat inspection data of farms using a set of derived statistical…”
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