Search Results - "HILLSON, Nathan J"

j5 DNA Assembly Design Automation Software by Hillson, Nathan J, Rosengarten, Rafael D, Keasling, Jay D

“…Recent advances in Synthetic Biology have yielded standardized and automatable DNA assembly protocols that enable a broad range of biotechnological research…”
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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology by Galdzicki, Michal, Clancy, Kevin P, Oberortner, Ernst, Pocock, Matthew, Quinn, Jacqueline Y, Rodriguez, Cesar A, Roehner, Nicholas, Wilson, Mandy L, Adam, Laura, Anderson, J Christopher, Bartley, Bryan A, Beal, Jacob, Chandran, Deepak, Chen, Joanna, Densmore, Douglas, Endy, Drew, Grünberg, Raik, Hallinan, Jennifer, Hillson, Nathan J, Johnson, Jeffrey D, Kuchinsky, Allan, Lux, Matthew, Misirli, Goksel, Peccoud, Jean, Plahar, Hector A, Sirin, Evren, Stan, Guy-Bart, Villalobos, Alan, Wipat, Anil, Gennari, John H, Myers, Chris J, Sauro, Herbert M

“…The synthetic biology research community describes a standard language for exchanging designs of biological 'parts'. The re-use of previously validated designs…”
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Repurposing a microfluidic formulation device for automated DNA construction by Goyal, Garima, Elsbree, Nick, Fero, Michael, Hillson, Nathan J, Linshiz, Gregory

“…Microfluidic applications have expanded greatly over the past decade. For the most part, however, each microfluidics platform is developed with a specific task…”
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Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning by Opgenorth, Paul, Costello, Zak, Okada, Takuya, Goyal, Garima, Chen, Yan, Gin, Jennifer, Benites, Veronica, de Raad, Markus, Northen, Trent R, Deng, Kai, Deutsch, Samuel, Baidoo, Edward E. K, Petzold, Christopher J, Hillson, Nathan J, Garcia Martin, Hector, Beller, Harry R

“…The Design–Build–Test–Learn (DBTL) cycle, facilitated by exponentially improving capabilities in synthetic biology, is an increasingly adopted metabolic…”
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Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering by Alonso-Gutierrez, Jorge, Kim, Eun-Mi, Batth, Tanveer S., Cho, Nathan, Hu, Qijun, Chan, Leanne Jade G., Petzold, Christopher J., Hillson, Nathan J., Adams, Paul D., Keasling, Jay D., Garcia Martin, Hector, Lee, Taek Soon

“…Targeted proteomics is a convenient method determining enzyme expression levels, but a quantitative analysis of these proteomic data has not been fully…”
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Fluorescent amplification for next generation sequencing (FA-NGS) library preparation by Chiniquy, Jennifer, Garber, Megan E, Mukhopadhyay, Aindrila, Hillson, Nathan J

“…Next generation sequencing (NGS) has become a universal practice in modern molecular biology. As the throughput of sequencing experiments increases, the…”
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Engineering of Ralstonia eutropha H16 for Autotrophic and Heterotrophic Production of Methyl Ketones by Müller, Jana, MacEachran, Daniel, Burd, Helcio, Sathitsuksanoh, Noppadon, Bi, Changhao, Yeh, Yi-Chun, Lee, Taek Soon, Hillson, Nathan J, Chhabra, Swapnil R, Singer, Steven W, Beller, Harry R

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Modular automated bottom-up proteomic sample preparation for high-throughput applications by Chen, Yan, Kaplan Lease, Nurgul, Gin, Jennifer W, Ogorzalek, Tadeusz L, Adams, Paul D, Hillson, Nathan J, Petzold, Christopher J

“…Manual proteomic sample preparation methods limit sample throughput and often lead to poor data quality when thousands of samples must be analyzed. Automated…”
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Cloud-enabled microscopy and droplet microfluidic platform for specific detection of Escherichia coli in water by Golberg, Alexander, Linshiz, Gregory, Kravets, Ilia, Stawski, Nina, Hillson, Nathan J, Yarmush, Martin L, Marks, Robert S, Konry, Tania

“…We report an all-in-one platform - ScanDrop - for the rapid and specific capture, detection, and identification of bacteria in drinking water. The ScanDrop…”
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Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production by Bi, Changhao, Su, Peter, Müller, Jana, Yeh, Yi-Chun, Chhabra, Swapnil R, Beller, Harry R, Singer, Steven W, Hillson, Nathan J

“…The chemoautotrophic bacterium Ralstonia eutropha can utilize H2/CO2 for growth under aerobic conditions. While this microbial host has great potential to be…”
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Jungle Express is a versatile repressor system for tight transcriptional control by Ruegg, Thomas L., Pereira, Jose H., Chen, Joseph C., DeGiovanni, Andy, Novichkov, Pavel, Mutalik, Vivek K., Tomaleri, Giovani P., Singer, Steven W., Hillson, Nathan J., Simmons, Blake A., Adams, Paul D., Thelen, Michael P.

“…Tightly regulated promoters are essential for numerous biological applications, where strong inducibility, portability, and scalability are desirable. Current…”
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SBOL Visual: A Graphical Language for Genetic Designs by Quinn, Jacqueline Y, Cox, 3rd, Robert Sidney, Adler, Aaron, Beal, Jacob, Bhatia, Swapnil, Cai, Yizhi, Chen, Joanna, Clancy, Kevin, Galdzicki, Michal, Hillson, Nathan J, Le Novère, Nicolas, Maheshwari, Akshay J, McLaughlin, James Alastair, Myers, Chris J, P, Umesh, Pocock, Matthew, Rodriguez, Cesar, Soldatova, Larisa, Stan, Guy-Bart V, Swainston, Neil, Wipat, Anil, Sauro, Herbert M

“…Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. It consists of symbols representing DNA subsequences, including…”
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Ten simple rules for managing laboratory information by Berezin, Casey-Tyler, Aguilera, Luis U, Billerbeck, Sonja, Bourne, Philip E, Densmore, Douglas, Freemont, Paul, Gorochowski, Thomas E, Hernandez, Sarah I, Hillson, Nathan J, King, Connor R, Köpke, Michael, Ma, Shuyi, Miller, Katie M, Moon, Tae Seok, Moore, Jason H, Munsky, Brian, Myers, Chris J, Nicholas, Dequina A, Peccoud, Samuel J, Zhou, Wen, Peccoud, Jean

“…Information is the cornerstone of research, from experimental (meta)data and computational processes to complex inventories of reagents and equipment. These 10…”
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Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme by de Rond, Tristan, Stow, Parker, Eigl, Ian, Johnson, Rebecca E, Chan, Leanne Jade G, Goyal, Garima, Baidoo, Edward E K, Hillson, Nathan J, Petzold, Christopher J, Sarpong, Richmond, Keasling, Jay D

“…In Pseudoalteromonas rubra , an unclustered biosynthetic gene encodes a di-iron oxygenase-like enzyme that catalyzes regiospecific C–H activation and…”
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plant glycosyltransferase clone collection for functional genomics by Lao, Jeemeng, Oikawa, Ai, Bromley, Jennifer R, McInerney, Peter, Suttangkakul, Anongpat, Smith‐Moritz, Andreia M, Plahar, Hector, Chiu, Tsan‐Yu, González Fernández‐Niño, Susana M, Ebert, Berit, Yang, Fan, Christiansen, Katy M, Hansen, Sara F, Stonebloom, Solomon, Adams, Paul D, Ronald, Pamela C, Hillson, Nathan J, Hadi, Masood Z, Vega‐Sánchez, Miguel E, Loqué, Dominique, Scheller, Henrik V, Heazlewood, Joshua L

“…The glycosyltransferases (GTs) are an important and functionally diverse family of enzymes involved in glycan and glycoside biosynthesis. Plants have evolved…”
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Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli by Javidpour, Pouya, Deutsch, Samuel, Mutalik, Vivek K, Hillson, Nathan J, Petzold, Christopher J, Keasling, Jay D, Beller, Harry R

“…Ladderanes are hydrocarbon chains with three or five linearly concatenated cyclobutane rings that are uniquely produced as membrane lipid components by anammox…”
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Cell pole—specific activation of a critical bacterial cell cycle kinase by Iniesta, Antonio A., Hillson, Nathan J., Shapiro, Lucy

“…Caulobacter crescentus integrates phospho-signaling pathways and transcription factor regulatory cascades to drive the cell cycle. Despite the essential role…”
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Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies by Golberg, Alexander, Vitkin, Edward, Linshiz, Gregory, Khan, Sabaa Ahmad, Hillson, Nathan J., Yakhini, Zohar, Yarmush, Martin L.

“…Biomass to fuel programs are under research and development worldwide. The largest biomass programs are underway in industrialized countries. In the coming…”
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DeviceEditor visual biological CAD canvas by Chen, Joanna, Densmore, Douglas, Ham, Timothy S, Keasling, Jay D, Hillson, Nathan J

“…Biological Computer Aided Design (bioCAD) assists the de novo design and selection of existing genetic components to achieve a desired biological activity, as…”
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization by Morrell, William C, Birkel, Garrett W, Forrer, Mark, Lopez, Teresa, Backman, Tyler W. H, Dussault, Michael, Petzold, Christopher J, Baidoo, Edward E. K, Costello, Zak, Ando, David, Alonso-Gutierrez, Jorge, George, Kevin W, Mukhopadhyay, Aindrila, Vaino, Ian, Keasling, Jay D, Adams, Paul D, Hillson, Nathan J, Garcia Martin, Hector

“…Although recent advances in synthetic biology allow us to produce biological designs more efficiently than ever, our ability to predict the end result of these…”
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