Search Results - "HAYS, John P"

Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory by Boers, Stefan A., Jansen, Ruud, Hays, John P.

“…Recent advancements in next-generation sequencing (NGS) have provided the foundation for modern studies into the composition of microbial communities. The use…”
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The internet of things for combatting antimicrobial resistance by Hays, John P

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Progress in Alternative Strategies to Combat Antimicrobial Resistance: Focus on Antibiotics by Murugaiyan, Jayaseelan, Kumar, P Anand, Rao, G Srinivasa, Iskandar, Katia, Hawser, Stephen, Hays, John P, Mohsen, Yara, Adukkadukkam, Saranya, Awuah, Wireko Andrew, Jose, Ruiz Alvarez Maria, Sylvia, Nanono, Nansubuga, Esther Patience, Tilocca, Bruno, Roncada, Paola, Roson-Calero, Natalia, Moreno-Morales, Javier, Amin, Rohul, Kumar, Ballamoole Krishna, Kumar, Abishek, Toufik, Abdul-Rahman, Zaw, Thaint Nadi, Akinwotu, Oluwatosin O, Satyaseela, Maneesh Paul, van Dongen, Maarten B M

“…Antibiotic resistance, and, in a broader perspective, antimicrobial resistance (AMR), continues to evolve and spread beyond all boundaries. As a result,…”
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Diversity, compositional and functional differences between gut microbiota of children and adults by Radjabzadeh, Djawad, Boer, Cindy G., Beth, Sanne A., van der Wal, Pelle, Kiefte-De Jong, Jessica C., Jansen, Michelle A. E., Konstantinov, Sergey R., Peppelenbosch, Maikel P., Hays, John P., Jaddoe, Vincent W. V., Ikram, M. Arfan, Rivadeneira, Fernando, van Meurs, Joyce B. J., Uitterlinden, André G., Medina-Gomez, Carolina, Moll, Henriette A., Kraaij, Robert

“…The gut microbiota has been shown to play diverse roles in human health and disease although the underlying mechanisms have not yet been fully elucidated…”
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Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota by Heikema, Astrid P, Horst-Kreft, Deborah, Boers, Stefan A, Jansen, Rick, Hiltemann, Saskia D, de Koning, Willem, Kraaij, Robert, de Ridder, Maria A J, van Houten, Chantal B, Bont, Louis J, Stubbs, Andrew P, Hays, John P

“…Illumina and nanopore sequencing technologies are powerful tools that can be used to determine the bacterial composition of complex microbial communities. In…”
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WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates by Heikema, Astrid P, Jansen, Rick, Hiltemann, Saskia D, Hays, John P, Stubbs, Andrew P

“…Abstract Background Bacterial plasmids often carry antibiotic resistance genes and are a significant factor in the spread of antibiotic resistance. The ability…”
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A Comprehensive Review of Recent Research into the Effects of Antimicrobial Peptides on Biofilms-January 2020 to September 2023 by Fontanot, Alessio, Ellinger, Isabella, Unger, Wendy W J, Hays, John P

“…Microbial biofilm formation creates a persistent and resistant environment in which microorganisms can survive, contributing to antibiotic resistance and…”
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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy by de Koning, Willem, Miladi, Milad, Hiltemann, Saskia, Heikema, Astrid, Hays, John P, Flemming, Stephan, van den Beek, Marius, Mustafa, Dana A, Backofen, Rolf, Grüning, Björn, Stubbs, Andrew P

“…Abstract Background Long-read sequencing can be applied to generate very long contigs and even completely assembled genomes at relatively low cost and with…”
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Differences in Systemic IgA Reactivity and Circulating Th Subsets in Healthy Volunteers With Specific Microbiota Enterotypes by Grosserichter-Wagener, Christina, Radjabzadeh, Djawad, van der Weide, Hessel, Smit, Kyra N, Kraaij, Robert, Hays, John P, van Zelm, Menno C

“…Changes in the intestinal microbiota have been associated with the development of immune-mediated diseases in humans. Additionally, the introduction of defined…”
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Genetic Analysis of mcr-1-Carrying Plasmids From Gram-Negative Bacteria in a Dutch Tertiary Care Hospital: Evidence for Intrapatient and Interspecies Transmission Events by Strepis, Nikolaos, Voor in ’t holt, Anne F., Vos, Margreet C., Zandijk, Willemien H. A., Heikema, Astrid P., Hays, John P., Severin, Juliëtte A., Klaassen, Corné H. W.

“…The role of plasmids in the complex pandemic of antimicrobial resistance is increasingly being recognized. In this respect, multiple mobile colistin resistance…”
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Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing by Raphenya, Amogelang R., Robertson, James, Jamin, Casper, de Oliveira Martins, Leonardo, Maguire, Finlay, McArthur, Andrew G., Hays, John P.

“…Whole genome sequencing (WGS) is a key tool in identifying and characterising disease-associated bacteria across clinical, agricultural, and environmental…”
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Plasmid-mediated AmpC: prevalence in community-acquired isolates in Amsterdam, the Netherlands, and risk factors for carriage by Reuland, E Ascelijn, Halaby, Teysir, Hays, John P, de Jongh, Denise M C, Snetselaar, Henrieke D R, van Keulen, Marte, Elders, Petra J M, Savelkoul, Paul H M, Vandenbroucke-Grauls, Christina M J E, Al Naiemi, Nashwan

“…The objective of this study was to determine the prevalence of pAmpC beta-lactamases in community-acquired Gram negative bacteria in the Netherlands, and to…”
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First Report of Colistin-Resistant Escherichia coli Carrying mcr-1 IncI2(delta) and IncX4 Plasmids from Camels ( Camelus dromedarius ) in the Gulf Region by Ghazawi, Akela, Strepis, Nikolaos, Anes, Febin, Yaaqeib, Dana, Ahmed, Amal, AlHosani, Aysha, AlShehhi, Mirah, Manzoor, Ashrat, Habib, Ihab, Wani, Nisar A, Hays, John P, Khan, Mushtaq

“…Addressing the emergence of antimicrobial resistance (AMR) poses a significant challenge in veterinary and public health. In this study, we focused on…”
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In vitro activity of novel apramycin-dextran nanoparticles and free apramycin against selected Dutch and Pakistani Klebsiella pneumonia isolates by Atlas, Nagina, Uzair, Bushra, Movellan, Julie, Gracia, Raquel, Dupin, Damien, Loinaz, Iraida, van Nostrum, Cornelus F., Hays, John P.

“…Klebsiella pneumoniae are bacteria associated with respiratory tract infections and are increasingly becoming resistant to antibiotics, including carbapenems…”
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Molecular Aspects of Moraxella catarrhalis Pathogenesis by DE VRIES, Stefan P. W, BOOTSMA, Hester J, HAYS, John P, HERMANS, Peter W. M

“…Erratum ( vol. 73 , p. 809 ) Article Usage Stats Services MMBR Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious…”
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Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen by DE VRIES, Stefan P. W, VAN HIJUM, Sacha A. F. T, SCHUELER, Wolfgang, RIESBECK, Kristian, HAYS, John P, HERMANS, Peter W. M, BOOTSMA, Hester J

“…Author's Correction ( vol. 194 , p. 7021 ) Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike…”
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Highly Specific Protease-Based Approach for Detection of Porphyromonas gingivalis in Diagnosis of Periodontitis by KAMAN, Wendy E, GALASSI, Fabiano, DE SOET, Johannes J, BIZZARRO, Sergio, LOOS, Bruno G, VEERMAN, Enno C. I, VAN BELKUM, Alex, HAYS, John P, BIKKER, Floris J

“…Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Detection and occurrence of plasmid-mediated AmpC in highly resistant gram-negative rods by Reuland, E Ascelijn, Hays, John P, de Jongh, Denise M C, Abdelrehim, Eman, Willemsen, Ina, Kluytmans, Jan A J W, Savelkoul, Paul H M, Vandenbroucke-Grauls, Christina M J E, al Naiemi, Nashwan

“…The aim of this study was to compare the current screening methods and to evaluate confirmation tests for phenotypic plasmidal AmpC (pAmpC) detection. For this…”
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OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice by Baumgartner, Desirée, Johannsen, Benita, Specht, Mara, Lüddecke, Jan, Rombach, Markus, Hin, Sebastian, Paust, Nils, von Stetten, Felix, Zengerle, Roland, Herz, Christopher, Peham, Johannes R, Paqué, Pune N, Attin, Thomas, Jenzer, Joël S, Körner, Philipp, Schmidlin, Patrick R, Thurnheer, Thomas, Wegehaupt, Florian J, Kaman, Wendy E, Stubbs, Andrew, Hays, John P, Rusu, Viorel, Michie, Alex, Binsl, Thomas, Stejskal, David, Karpíšek, Michal, Bao, Kai, Bostanci, Nagihan, Belibasakis, Georgios N, Mitsakakis, Konstantinos

“…Periodontitis and dental caries are two major bacterially induced, non-communicable diseases that cause the deterioration of oral health, with implications in…”
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Detection of Healthcare-Related Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Transmission Events Using Combined Genetic and Phenotypic Epidemiology by Voor In 't Holt, Anne F, Wattel, Agnes A, Boers, Stefan A, Jansen, Ruud, Hays, John P, Goessens, Wil H F, Vos, Margreet C

“…Since the year 2000 there has been a sharp increase in the prevalence of healthcare-related infections caused by extended-spectrum beta-lactamase…”
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