Search Results - "Gyõrffy, Balázs"
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Transcriptome‐level discovery of survival‐associated biomarkers and therapy targets in non‐small‐cell lung cancer
Published in British journal of pharmacology (01-02-2024)“…Background and Purpose Survival rate of patients with lung cancer has increased by over 60% in the recent two decades. With longer survival, the identification…”
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Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer
Published in Computational and structural biotechnology journal (01-01-2021)“…[Display omitted] Extensive research is directed to uncover new biomarkers capable to stratify breast cancer patients into clinically relevant cohorts…”
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Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer
Published in GeroScience (01-06-2023)“…Progress in ovarian cancer treatment lags behind other tumor types. With diagnosis usually at an advanced stage, there is a high demand for reliable prognostic…”
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Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Published in Journal of medical Internet research (26-07-2021)“…Background: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment…”
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Pancancer survival analysis of cancer hallmark genes
Published in Scientific reports (15-03-2021)“…Cancer hallmark genes are responsible for the most essential phenotypic characteristics of malignant transformation and progression. In this study, our aim was…”
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TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues
Published in International journal of molecular sciences (05-03-2021)“…Genes showing higher expression in either tumor or metastatic tissues can help in better understanding tumor formation and can serve as biomarkers of…”
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Validation of miRNA prognostic power in hepatocellular carcinoma using expression data of independent datasets
Published in Scientific reports (15-06-2018)“…Multiple studies suggested using different miRNAs as biomarkers for prognosis of hepatocellular carcinoma (HCC). We aimed to assemble a miRNA expression…”
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Determining consistent prognostic biomarkers of overall survival and vascular invasion in hepatocellular carcinoma
Published in Royal Society open science (01-12-2018)“…Potential prognostic biomarker candidates for hepatocellular carcinoma (HCC) are abundant, but their generalizability is unexplored. We cross-validated markers…”
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Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer
Published in PloS one (18-12-2013)“…In the last decade, optimized treatment for non-small cell lung cancer had lead to improved prognosis, but the overall survival is still very short. To further…”
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MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
Published in PloS one (09-06-2021)“…Scientists from nearly all disciplines face the problem of simultaneously evaluating many hypotheses. Conducting multiple comparisons increases the likelihood…”
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ROCplot.org: Validating predictive biomarkers of chemotherapy/hormonal therapy/anti‐HER2 therapy using transcriptomic data of 3,104 breast cancer patients
Published in International journal of cancer (01-12-2019)“…Systemic therapy of breast cancer can include chemotherapy, hormonal therapy and targeted therapy. Prognostic biomarkers are able to predict survival and…”
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Molecular stratifications, biomarker candidates and new therapeutic options in current medulloblastoma treatment approaches
Published in Cancer and metastasis reviews (01-03-2020)“…Medulloblastoma (MB) is the most common malignant childhood tumor of the brain. Multimodal treatment consisting of surgery, radiation therapy, and chemotherapy…”
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Integrated analysis of public datasets for the discovery and validation of survival-associated genes in solid tumors
Published in Innovation (New York, NY) (06-05-2024)“…Identifying genes with prognostic significance that can act as biomarkers in solid tumors can help stratify patients and uncover novel therapy targets. Here,…”
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DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer
Published in Biochimica et biophysica acta. Reviews on cancer (01-05-2022)“…DNA methylation is an epigenetic mechanism regulating gene expression. Changes in DNA methylation were suggested to be useful biomarkers for diagnosis, and for…”
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muTarget: A platform linking gene expression changes and mutation status in solid tumors
Published in International journal of cancer (15-01-2021)“…Large oncology repositories have paired genomic and transcriptomic data for all patients. We used these data to perform two independent analyses: to identify…”
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Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis
Published in Computational and structural biotechnology journal (01-01-2021)“…•Single-level data analysis produced by high-throughput technologies is limited by showing only a narrow window of cellular functions.•Data integration across…”
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Survival analysis in breast cancer using proteomic data from four independent datasets
Published in Scientific reports (18-08-2021)“…Breast cancer clinical treatment selection is based on the immunohistochemical determination of four protein biomarkers: ESR1, PGR, HER2, and MKI67. Our aim…”
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Transcriptomic datasets of cancer patients treated with immune-checkpoint inhibitors: a systematic review
Published in Journal of translational medicine (31-05-2022)“…The availability of immune-checkpoint inhibitors (ICI) in the last decade has resulted in a paradigm shift in certain areas of oncology. Patients can be…”
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Different mutations in SARS-CoV-2 associate with severe and mild outcome
Published in International journal of antimicrobial agents (01-02-2021)“…•A database of 4566 SARS-CoV-2 virus sequences and follow-up data was established•Mutations were mapped to amino acid changes for 3,733 non-silent…”
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Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients
Published in Endocrine-related cancer (01-04-2012)“…The validation of prognostic biomarkers in large independent patient cohorts is a major bottleneck in ovarian cancer research. We implemented an online tool to…”
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