Search Results - "Gusnanto, A"

False discovery rate, sensitivity and sample size for microarray studies by Pawitan, Yudi, Michiels, Stefan, Koscielny, Serge, Gusnanto, Arief, Ploner, Alexander

“…Motivation: In microarray data studies most researchers are keenly aware of the potentially high rate of false positives and the need to control it. One key…”
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Estimating the number of true discoveries in genome-wide association studies by Lee, Woojoo, Gusnanto, A., Salim, A., Magnusson, P., Sim, Xueling, Tai, E.S., Pawitan, Y.

“…Recent genome‐wide association studies have reported the discoveries of genetic variants of small to moderate effects. However, most studies of complex…”
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Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data by Gusnanto, Arief, Wood, Henry M., Pawitan, Yudi, Rabbitts, Pamela, Berri, Stefano

“…Motivation: Comparison of read depths from next-generation sequencing between cancer and normal cells makes the estimation of copy number alteration (CNA)…”
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346P Occurence and risk factors of chemotherapy-induced neutropenia in patients with breast cancer: A hospital-based assessment in Indonesia by Hutajulu, S.H., Sari, Y.K., Oktariani, S., Hardiyanti, M.S., Taroeno-Hariadi, K.W., Purwanto, I., Kurnianda, J., Gusnanto, A.

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Multidimensional local false discovery rate for microarray studies by Ploner, Alexander, Calza, Stefano, Gusnanto, Arief, Pawitan, Yudi

“…Motivation: The false discovery rate (fdr) is a key tool for statistical assessment of differential expression (DE) in microarray studies. Overall control of…”
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Sparse alternatives to ridge regression: a random effects approach by Gusnanto, Arief, Pawitan, Yudi

“…In a calibration of near-infrared (NIR) instrument, we regress some chemical compositions of interest as a function of their NIR spectra. In this process, we…”
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Partial least squares and logistic regression random-effects estimates for gene selection in supervised classification of gene expression data by Gusnanto, Arief, Ploner, Alexander, Shuweihdi, Farag, Pawitan, Yudi

“…[Display omitted] •Gene selection is needed in supervised classification of gene expression.•Respecting the characteristics of data is a key aspect to consider…”
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Identification of differentially expressed genes and false discovery rate in microarray studies by Gusnanto, Arief, Calza, Stefano, Pawitan, Yudi

“…To highlight the development in microarray data analysis for the identification of differentially expressed genes, particularly via control of false discovery…”
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Robust smooth segmentation approach for array CGH data analysis by Huang, Jian, Gusnanto, Arief, O'Sullivan, Kathleen, Staaf, Johan, Borg, Åke, Pawitan, Yudi

“…Motivation: Array comparative genomic hybridization (aCGH) provides a genome-wide technique to screen for copy number alteration. The existing segmentation…”
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A PCR-based expression signature of malignancy in follicular thyroid tumors by Foukakis, Theodoros, Gusnanto, Arief, Au, Amy YM, Höög, Anders, Lui, Weng-Onn, Larsson, Catharina, Wallin, Göran, Zedenius, Jan

“…The diagnosis of follicular thyroid carcinoma (FTC) in the absence of metastasis can only be established postoperatively. Moreover, high-risk FTCs are often…”
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Abstract 5507: Toll Like Receptor 4 Activation Elicits Pro-atherogenic Gene Activation In Monocytes In Humans by Sivapalaratnam, Suthesh, Farrugia, Rosienne, Nieuwdorp, Max, Gusnanto, A, Watkins, Nick A, Zwaginga, Jaap-Jan, Ouwehand, Willem H, Trip, Mieke D, Stroes, Erik S, Kastelein, John J

“…Abstract only Introduction: Inflammatory activation of both circulating blood cells as well as vessel wall cells is a hallmark of atherogenesis. Agonists of…”
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Variable selection in random calibration of near-infrared instruments: ridge regression and partial least squares regression settings by Gusnanto, Arief, Pawitan, Yudi, Huang, Jian, Lane, Bill

“…Standard methods for calibration of near‐infrared instruments, such as partial least‐squares (PLS) and ridge regression (RR), typically use the full set of…”
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A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift by Xue, Yongtao, Haas, Stefan A., Brino, Laurent, Gusnanto, Arief, Reimers, Mark, Talibi, Driss, Vingron, Martin, Ekwall, Karl, Wright, Anthony P. H.

“…Completion of the fission yeast genome sequence has opened up possibilities for post‐genomic approaches. We have constructed a DNA microarray for genome‐wide…”
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YS03
Gene Expression Profiling of Platelet RNA Identifies Differentially Expressed Genes Associated with Collagen Signalling Responses by Carr, P., Gusnanto, A., Macaulay, I. C., Dudbridge, F., Langford, C., Ouwehand, W. H., Watkins, N. A.

“…Platelet Glycoprotein VI (GPVI) is a lineage specific collagen signalling receptor that transmits outside‐in signalling via the FcR γ‐chain. Two GPVI…”
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YS03Gene Expression Profiling of Platelet RNA Identifies Differentially Expressed Genes Associated with Collagen Signalling Responses by Carr, P., Gusnanto, A., Macaulay, I. C., Dudbridge, F., Langford, C., Ouwehand, W. H., Watkins, N. A.

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SIMULTANEOUS SESSIONS - YOUNG SCIENTISTS: MARGARET KENWRIGHT AWARD: YS03 Gene Expression Profiling of Platelet RNA Identifies Differentially Expressed Genes Associated with Collagen Signalling Responses by Carr, P, Gusnanto, A, Macaulay, I C, Dudbridge, F, Langford, C, Ouwehand, W H, Watkins, NA

“…Platelet Glycoprotein VI (GPVI) is a lineage specific collagen signalling receptor that transmits outside-in signalling via the FcR gamma -chain. Two GPVI…”
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P50
Novel Activatory and Inhibitory Platelet Receptors Identified Through Comparative Gene Expression Profiling of Megakaryocytes and Erythroblasts by Macaulay, I. C., Tijssen, M. R., Thijssen‐Timmer, D., Gusnanto, A., Carr, P., Steward, M., Langford, C., Ellis, P., Dudbridge, F., Zwaginga, J., Watkins, N. A., Van Der Schoot, E., Ouwehand, W. H.

“…Summary  Platelets are derived from a polyploid precursor cell, the megakaryocyte (MK). The MK and the precursor of red cells, the erythroblast (EBs) share a…”
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P50Novel Activatory and Inhibitory Platelet Receptors Identified Through Comparative Gene Expression Profiling of Megakaryocytes and Erythroblasts by Macaulay, I. C., Tijssen, M. R., Thijssen-Timmer, D., Gusnanto, A., Carr, P., Steward, M., Langford, C., Ellis, P., Dudbridge, F., Zwaginga, J., Watkins, N. A., Van Der Schoot, E., Ouwehand, W. H.

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DNA ADDUCTS OF BENZO[A]PYRENE- AND DIBENZO[A,L]PYRENE-DIOL EPOXIDES IN HUMAN LUNG EPITHELIAL CELLS: KINETICS OF ADDUCT REMOVAL, EFFECTS ON CELL CYCLE CHECKPOINTS, AND GENE EXPRESSION by Dreij, Kristian, Bajak, Edyta, Sundberg, Kathrin, Cotgreave, Ian, Jernström, Bengt, Seidel, Albrecht, Gusnanto, Arief

“…The fjord-region PAH dibenzo[a,l]pyrene (DBP) is considerably more carcinogenic than the bay-region benzo[a]pyrene (BP). This fact can be ascribed to…”
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A DNA microarray for genome-wide gene expression analysis in fission yeast by Xue, YT, Haas, S, Brino, L, Gusnanto, A, Riemers, M, Talibi, D, Vingron, M, Ekwall, K, Wright, APH

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