Search Results - "Gultyaev, Alexander P"

Hemagglutinin Subtype Specificity and Mechanisms of Highly Pathogenic Avian Influenza Virus Genesis by de Bruin, Anja C M, Funk, Mathis, Spronken, Monique I, Gultyaev, Alexander P, Fouchier, Ron A M, Richard, Mathilde

“…Highly Pathogenic Avian Influenza Viruses (HPAIVs) arise from low pathogenic precursors following spillover from wild waterfowl into poultry populations. The…”
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In Silico Analyses of the Role of Codon Usage at the Hemagglutinin Cleavage Site in Highly Pathogenic Avian Influenza Genesis by Funk, Mathis, de Bruin, Anja C M, Spronken, Monique I, Gultyaev, Alexander P, Richard, Mathilde

“…A vast diversity of 16 influenza hemagglutinin (HA) subtypes are found in birds. Interestingly, viruses from only two subtypes, H5 and H7, have so far evolved…”
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Subtype-specific structural constraints in the evolution of influenza A virus hemagglutinin genes by Gultyaev, Alexander P., Spronken, Monique I., Richard, Mathilde, Schrauwen, Eefje J. A., Olsthoorn, René C. L., Fouchier, Ron A. M.

“…The influenza A virus genome consists of eight RNA segments. RNA structures within these segments and complementary (cRNA) and protein-coding mRNAs may play a…”
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Optimisations and Challenges Involved in the Creation of Various Bioluminescent and Fluorescent Influenza A Virus Strains for In Vitro and In Vivo Applications by Spronken, Monique I, Short, Kirsty R, Herfst, Sander, Bestebroer, Theo M, Vaes, Vincent P, van der Hoeven, Barbara, Koster, Abraham J, Kremers, Gert-Jan, Scott, Dana P, Gultyaev, Alexander P, Sorell, Erin M, de Graaf, Miranda, Bárcena, Montserrat, Rimmelzwaan, Guus F, Fouchier, Ron A

“…Bioluminescent and fluorescent influenza A viruses offer new opportunities to study influenza virus replication, tropism and pathogenesis. To date, several…”
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Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants by Gultyaev, Alexander P, Roussis, Andreas

“…enod40 is a plant gene that participates in the regulation of symbiotic interaction between leguminous plants and bacteria or fungi. Furthermore, it has been…”
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Tospovirus ambisense genomic RNA segments use almost complete repertoire of stable tetraloops in the intergenic region by Clabbers, Max T B, Olsthoorn, Rene C L, Gultyaev, Alexander P

“…The intergenic regions of the ambisense RNA segments of viruses from the Tospovirus genus form large extended RNA structures that regulate virus replication…”
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RNA structural constraints in the evolution of the influenza A virus genome NP segment by Gultyaev, Alexander P, Tsyganov-Bodounov, Anton, Spronken, Monique IJ, van der Kooij, Sander, Fouchier, Ron AM, Olsthoorn, René CL

“…Conserved RNA secondary structures were predicted in the nucleoprotein (NP) segment of the influenza A virus genome using comparative sequence and structure…”
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Conserved structural RNA domains in regions coding for cleavage site motifs in hemagglutinin genes of influenza viruses by Gultyaev, Alexander P, Richard, Mathilde, Spronken, Monique I, Olsthoorn, René C L, Fouchier, Ron A M

“…Abstract The acquisition of a multibasic cleavage site (MBCS) in the hemagglutinin (HA) glycoprotein is the main determinant of the conversion of low…”
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Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB) by Martorelli, Irene, Helwerda, Leon S., Kerkvliet, Jesse, Gomes, Sofia I. F., Nuytinck, Jorinde, van der Werff, Chivany R. A., Ramackers, Guus J., Gultyaev, Alexander P., Merckx, Vincent S. F. T., Verbeek, Fons J.

“…Fungi have crucial roles in ecosystems, and are important associates for many organisms. They are adapted to a wide variety of habitats, however their global…”
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A family of non-classical pseudoknots in influenza A and B viruses by Gultyaev, Alexander P., Olsthoorn, René C. L.

“…A very conserved pseudoknot structure has been shown to fold in influenza virus RNA. The pseudoknot encompasses the 3' splice site of segment 8 RNA in both…”
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Discontinuous Subgenomic RNA Synthesis in Arteriviruses Is Guided by an RNA Hairpin Structure Located in the Genomic Leader Region by VAN DEN BORN, Erwin, POSTHUMA, Clara C, GULTYAEV, Alexander P, SNIJDER, Eric J

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions by Zammit, Alan, Helwerda, Leon, Olsthoorn, René C L, Verbeek, Fons J, Gultyaev, Alexander P

“…Abstract Motivation The Flavivirus genus includes several important pathogens, such as Zika, dengue and yellow fever virus. Flavivirus RNA genomes contain a…”
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Insertions of codons encoding basic amino acids in H7 hemagglutinins of influenza A viruses occur by recombination with RNA at hotspots near snoRNA binding sites by Gultyaev, Alexander P, Spronken, Monique I, Funk, Mathis, Fouchier, Ron A M, Richard, Mathilde

“…The presence of multiple basic amino acids in the protease cleavage site of the hemagglutinin (HA) protein is the main molecular determinant of virulence of…”
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Structural features of an Xrn1-resistant plant virus RNA by Dilweg, Ivar W., Gultyaev, Alexander P., Olsthoorn, René C.

“…Xrn1 is a major 5ʹ-3ʹ exoribonuclease involved in the RNA metabolism of many eukaryotic species. RNA viruses have evolved ways to thwart Xrn1 in order to…”
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ANTISENSE RNA-REGULATED PROGRAMMED CELL DEATH by Gerdes, Kenn, Gultyaev, Alexander P, Franch, Thomas, Pedersen, Kim, Mikkelsen, Nikolaj D

“…Eubacterial plasmids and chromosomes encode multiple killer genes belonging to the hok gene family. The plasmid-encoded killer genes mediate plasmid…”
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All genera of Flaviviridae host a conserved Xrn1-resistant RNA motif by Dilweg, Ivar W., Savina, Anya, Köthe, Susanne, Gultyaev, Alexander P., Bredenbeek, Peter J., Olsthoorn, René C.L.

“…After infection by flaviviruses like Zika and West Nile virus, eukaryotic hosts employ the well-conserved endoribonuclease Xrn1 to degrade the viral genomic…”
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Xrn1-resistant RNA structures are well-conserved within the genus flavivirus by Dilweg, Ivar W., Bouabda, Assia, Dalebout, Tim, Gultyaev, Alexander P., Bredenbeek, Peter J., Olsthoorn, R. C. L.

“…Subgenomic RNAs are produced by several RNA viruses through incomplete degradation of their genomic RNA by the exoribonuclease Xrn1, and have been shown to be…”
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Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements by Gultyaev, Alexander P, Koster, Celine, van Batenburg, Diederik Cames, Sistermans, Tom, van Belle, Niels, Vijfvinkel, Daan, Roussis, Andreas

“…Abstract Plant long noncoding RNA enod40 is involved in the regulation of symbiotic associations with bacteria, in particular, in nitrogen-fixing root nodules…”
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Nucleotide sequence as key determinant driving insertions at influenza A virus hemagglutinin cleavage sites by Monique I. Spronken, Mathis Funk, Alexander P. Gultyaev, Anja C. M. de Bruin, Ron A. M. Fouchier, Mathilde Richard

“…Abstract Highly pathogenic avian influenza viruses (HPAIVs) emerge from H5 and H7 low pathogenic avian influenza viruses (LPAIVs), most frequently upon…”
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The 5′ and 3′ extremities of the satellite tobacco necrosis virus translational enhancer domain contribute differentially to stimulation of translation by VAN LIPZIG, ROSALINDE, GULTYAEV, ALEXANDER P., PLEIJ, CORNELIS W.A., VAN MONTAGU, MARC, CORNELISSEN, MARC, MEULEWAETER, FRANK

“…The translational enhancer domain (TED) of satellite tobacco necrosis virus (STNV) RNA stimulates translation of uncapped RNAs autonomously. Here we set out to…”
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