Search Results - "Gultyaev, A. P."

A compensatory mutagenesis study of a conserved hairpin in the M gene segment of influenza A virus shows its role in virus replication by Spronken, M. I., van de Sandt, C. E., de Jongh, E. P., Vuong, O., van der Vliet, S., Bestebroer, T. M., Olsthoorn, R. C. L., Rimmelzwaan, G. F., Fouchier, R.A. M., Gultyaev, A. P.

“…RNA structures are increasingly recognized to be of importance during influenza A virus replication. Here, we investigated a predicted conserved hairpin in the…”
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PseudoBase: a database with RNA pseudoknots by van Batenburg, F H, Gultyaev, A P, Pleij, C W, Ng, J, Oliehoek, J

“…PseudoBase is a database containing structural, functional and sequence data related to RNA pseudo-knots. It can be reached at http://wwwbio. Leiden Univ.nl/…”
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Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end by Koenig, R, Barends, S, Gultyaev, A.P, Lesemann, D.E, Vetten, H.J, Loss, S, Pleij, C.W.A

“…1 Biologische Bundesanstalt für Land- und Forstwirtschaft, Institut für Pflanzenvirologie, Mikrobiologie und biologische Sicherheit, Messeweg 11, D-38104…”
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ANTISENSE RNA-REGULATED PROGRAMMED CELL DEATH by Gerdes, Kenn, Gultyaev, Alexander P, Franch, Thomas, Pedersen, Kim, Mikkelsen, Nikolaj D

“…Eubacterial plasmids and chromosomes encode multiple killer genes belonging to the hok gene family. The plasmid-encoded killer genes mediate plasmid…”
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PseudoBase: structural information on RNA pseudoknots by van Batenburg, F H, Gultyaev, A P, Pleij, C W

“…PseudoBase is a database containing structural, functional and sequence data related to RNA pseudo-knots. It can be reached at http://wwwbio.LeidenUniv.nl/…”
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An APL-programmed genetic algorithm for the prediction of RNA secondary structure by Van Batenburg, F.H.D., Gultyaev, A.P., Pleij, C.W.A.

“…The possibilities of using a genetic algorithm for the prediction of RNA secondary structure were investigated. The algorithm, using the procedure of stepwise…”
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PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots by Taufer, Michela, Licon, Abel, Araiza, Roberto, Mireles, David, van Batenburg, F.H.D, Gultyaev, Alexander P, Leung, Ming-Ying

“…Pseudoknots have been recognized to be an important type of RNA secondary structures responsible for many biological functions. PseudoBase, a widely used…”
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An approximation of loop free energy values of RNA H-pseudoknots by GULTYAEV, ALEXANDER P., VAN BATENBURG, F.H.D., PLEIJ, CORNELIS W.A.

“…A set of free energy values is suggested for RNA H-pseudoknot loops. The parameters are adjusted to be consistent with the theory of polymer thermodynamics and…”
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Genetic Manipulation of Arterivirus Alternative mRNA Leader-Body Junction Sites Reveals Tight Regulation of Structural Protein Expression by Pasternak, A O, Gultyaev, A P, Spaan, W J, Snijder, E J

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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The computer simulation of RNA folding involving pseudoknot formation by GULTYAEV, A. P

“…The algorithm and the program for the prediction of RNA secondary structure with pseudoknot formation have been proposed. The algorithm simulates stepwise…”
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A pH-jump approach for investigating secondary structure refolding kinetics in RNA by Nagel, J. H. A., Gultyaev, A. P., Öistämö, K. J., Gerdes, K., Pleij, C. W. A.

“…It has been shown that premature translation of the plasmid-mediated toxin in hok/sok of plasmid R1 and pnd/pndB of plasmid R483 is prevented during…”
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The mechanism of actinomycin D-mediated inhibition of HIV-1 reverse transcription by Jeeninga, Rienk E., Huthoff, Hendrik T., Berkhout, Ben, Gultyaev, Alexander P.

“…The mechanism of reverse transcription was analyzed in vitro with RNA templates and the reverse transcriptase (RT) enzyme of human immunodeficiency virus type…”
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Metastable structures and refolding kinetics in hok mRNA of plasmid R1 by NAGEL, J.H.A., GULTYAEV, A.P., GERDES, K., PLEIJ, C.W.A.

“…Programmed cell death by hok/sok of plasmid R1 and pnd/pndB of R483 mediates plasmid maintenance by killing of plasmid-free cells. It has been previously…”
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Similarities between the secondary structure of satellite tobacco mosaic virus and tobamovirus RNAs by Gultyaev, Alexander P, Van Batenburg, Eke, Pleij, Cornelis W. A

“…1 Institute of Theoretical Biology, University of Leiden, Kaiserstraat 63, 2311 GP Leiden and 2 Department of Biochemistry, Gorlaeus Laboratories, University…”
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The nucleotide sequence of satellite tobacco necrosis virus strain C and helper-assisted replication of wild-type and mutant clones of the virus by Bringloe, DH, Gultyaev, AP, Pelpel, M, Pleij, CW, Coutts, RH

“…DH Bringloe, AP Gultyaev, M Pelpel, CW Pleij and RH Coutts Biology Department, Imperial College of Science, Technology and Medicine, London, UK. The complete…”
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Arterivirus Discontinuous mRNA Transcription Is Guided by Base Pairing between Sense and Antisense Transcription-Regulating Sequences by van Marle, Guido, Dobbe, Jessika C., Gultyaev, Alexander P., Luytjes, Willem, Willy J. M. Spaan, Snijder, Eric J.

“…To generate an extensive set of subgenomic (sg) mRNAs, nidoviruses (arteriviruses and coronaviruses) use a mechanism of discontinuous transcription. During…”
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Secondary structure and function of the 5'-proximal region of the equine arteritis virus RNA genome by Van Den Born, Erwin, Gultyaev, Alexander P, Snijder, Eric J

“…Nidoviruses produce an extensive 3'-coterminal nested set of subgenomic mRNAs, which are used to express their structural proteins. In addition, arterivirus…”
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The Computer Simulation of RNA Folding Pathways Using a Genetic Algorithm by Gultyaev, Alexander P., van Batenburg, F.H.D., Pleij, Cornelis W.A.

“…A procedure for simulating the RNA folding process using the principles of genetic algorithm is proposed. The method allows one to simulate a folding pathway…”
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Programmed cell death by hok/sok of plasmid R1: Processing at the hok mRNA 3′-end triggers structural rearrangements that allow translation and antisense RNA binding by Franch, Thomas, Gultyaev, Alexander P., Gerdes, Kenn

“…The hok/sok locus of plasmid R1 mediates plasmid stabilization by killing of plasmid-free cells. The locus specifies two RNAs, hok mRNA and Sok antisense RNA…”
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Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean by Girard, Geneviève, Roussis, Andreas, Gultyaev, Alexander P., Pleij, Cornelis W. A., Spaink, Herman P.

“…The plant gene enod40 is highly conserved among legumes and also present in various non‐legume species. It is presumed to play a central regulatory role in the…”
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