Search Results - "Guindon, S"

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building by Gouy, Manolo, Guindon, Stéphane, Gascuel, Olivier

“…We present SeaView version 4, a multiplatform program designed to facilitate multiple alignment and phylogenetic tree building from molecular sequence data…”
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Bayesian estimation of divergence times from large sequence alignments by Guindon, Stéphane

“…Bayesian estimation of divergence times from molecular sequences relies on sophisticated Markov chain Monte Carlo techniques, and Metropolis-Hastings (MH)…”
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Performance of standard and stochastic branch-site models for detecting positive selection among coding sequences by Lu, Ashley, Guindon, Stéphane

“…The branch-site model is a widely popular approach that accommodates for the lineage- and the site-specific heterogeneity of natural selection regimes among…”
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Accounting for ambiguity in ancestral sequence reconstruction by Oliva, A, Pulicani, S, Lefort, V, Bréhélin, L, Gascuel, O, Guindon, S

“…Abstract Motivation The reconstruction of ancestral genetic sequences from the analysis of contemporaneous data is a powerful tool to improve our understanding…”
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EvoLaps 2: Advanced phylogeographic visualization by Chevenet, F, Fargette, D, Bastide, P, Vitré, T, Guindon, S

“…Abstract EvoLaps is a user-friendly web application designed to visualize the spatial and temporal spread of pathogens. It takes an annotated tree as entry,…”
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PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference by Guindon, Stéphane, Lethiec, Franck, Duroux, Patrice, Gascuel, Olivier

“…PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and…”
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Phylogeny.fr: robust phylogenetic analysis for the non-specialist by Dereeper, A, Guignon, V, Blanc, G, Audic, S, Buffet, S, Chevenet, F, Dufayard, J.-F, Guindon, S, Lefort, V, Lescot, M, Claverie, J.-M, Gascuel, O

“…Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment,…”
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Functions of reminiscence in later life: proposition of a model and applications by Cappeliez, P, Rivard, V, Guindon, S

“…Abstract Our objective is to draw some practical implications from current research on the functions of reminiscence in later life. In the first part, based on…”
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Control of the False Discovery Rate Applied to the Detection of Positively Selected Amino Acid Sites by Guindon, S.

“…In this article, we consider the probabilistic identification of amino acid positions that evolve under positive selection as a multiple hypothesis testing…”
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Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes by Guindon, S, Perrière, G

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Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses by Lanfear, Robert, Calcott, Brett, Ho, Simon Y W, Guindon, Stephane

“…In phylogenetic analyses of molecular sequence data, partitioning involves estimating independent models of molecular evolution for different sets of sites in…”
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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood by Guindon, Stéphane, Gascuel, Olivier, Rannala, Bruce

“…The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny…”
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Search for pair production of heavy vector-like quarks decaying to high-p T W bosons and b quarks in the lepton-plus-jets final state in pp collisions at √s=13 TeV with the ATLAS detector by Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

“…A search is presented for the pair production of heavy vector-like T quarks, primarily targeting the T quark decays to a W boson and a b-quark. The search is…”
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Search for Dark Matter Produced in Association with a Higgs Boson Decaying to b¯b Using 36  fb−1 of pp Collisions at √s=13  TeV with the ATLAS Detector by Aaboud, M., Bergeås, Elin Kuutmann, Bokan, Peter, Brenner, Richard, Ekelöf, Tord, Ellert, Mattias, Ferrari, Arnaud, Gradin, P.O. Joakim, Isacson, Max, Madsen, Alexander, Mårtensson, Mikael, Öhman, Henrik, Rangel-Smith, Camilla, De Bruin, Pedro Sales, Zwalinski, L.

“…Several extensions of the standard model predict associated production of dark-matter particles with a Higgs boson. Such processes are searched for in final…”
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Search for the Standard Model Higgs boson produced in association with top quarks and decaying into bb̄ in pp collisions at √s = 8 TeV with the ATLAS detector by Aad, Georges, Abbott, Brad, Abdallah, Jalal, Abdinov, Ovsat Bahram oglu, Aben, Rosemarie, Abolins, Maris, AbouZeid, Hass, Abramowicz, Halina, Abreu, Henso, Abreu, Rômulo F, Buanes, Trygve, Dale, Ørjan, Eigen, Gerald, Kastanas, Alex, Liebig, Wolfgang, Lipniacka, Anna, Martin dit Latour, Bertrand, Mæland, Steffen, Rosendahl, Peter Lundgaard, Sandaker, Heidi, Sjursen, Therese B, Smestad, Lillian, Stugu, Bjarne, Ugland, Maren, Zalieckas, Justas, Bugge, Lars, Bugge, Magnar Kopangen, Cameron, David Gordon, Catmore, James Richard, Czyczula, Zofia, Franconi, Laura, Garonne, Vincent, Gjelsten, Børge Kile, Gramstad, Eirik, Morisbak, Vanja, Nilsen, Jon Kerr, Ould-Saada, Farid, Pajchel, Katarina, Pedersen, Maiken, Raddum, Silje Hattrem, Read, Alexander Lincoln, Røhne, Ole Myren, Stapnes, Steinar, Strandlie, Are, Abulaiti, Yiming, Acharya, Bobby S, Adamczyk, Leszek, Adams, David, Adelman, Jareed, Adomeit, Stefanie, ATLAS, Collaboration

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Measurement of the inclusive isolated prompt photon cross section in pp collisions at s=8TeV with the ATLAS detector by Aad, G, Abbott, B., Abdallah, J, Abdinov, O, Abeloos, B, Aben, R, Åkesson, Torsten, Bocchetta, Simona, BRYNGEMARK, LENE, Doglioni, Caterina, Floderus, Anders, Hawkins, Anthony, Hedberg, Vincent, Ivarsson, Jenny, Jarlskog, Göran, Lytken, Else, Mjörnmark, Ulf, Smirnova, Oxana, Viazlo, Oleksandr

“…A measurement of the cross section for the inclusive production of isolated prompt photons in proton-proton collisions at a centre-of-mass energy of s=8 TeV is…”
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Search for long-lived neutral particles decaying into lepton jets in proton-proton collisions at √s= 8TeV with the ATLAS detector by Aad, Georges, Abbott, Brad, Abdallah, Jalal, Abdel Khalek, Samah, Abdinov, Ovsat Bahram oglu, Aben, Rosemarie, Abi, Babak, Abolins, Maris, AbouZeid, Hass, Abramowicz, Halina, Buanes, Trygve, Dale, Ørjan, Eigen, Gerald, Kastanas, Alex, Liebig, Wolfgang, Lipniacka, Anna, Martin dit Latour, Bertrand, Rosendahl, Peter Lundgaard, Sandaker, Heidi, Sjursen, Therese B, Smestad, Lillian, Stugu, Bjarne, Ugland, Maren, Bugge, Lars, Bugge, Magnar Kopangen, Cameron, David Gordon, Catmore, James Richard, Czyczula, Zofia, Franconi, Laura, Gjelsten, Børge Kile, Gramstad, Eirik, Ould-Saada, Farid, Pajchel, Katarina, Pedersen, Maiken, Read, Alexander Lincoln, Røhne, Ole Myren, Stapnes, Steinar, Strandlie, Are, Abreu, Henso, Abreu, Rômulo F, Adamczyk, Leszek, Adams, David, Adelman, Jareed, Adomeit, Stefanie, Adye, Tim, Agatonovic-Jovin, Tatjana, Aguilar Saavedra, Juan Antonio, Åkerstedt, Henrik, Åkesson, Torsten P.A, Åsman, Barbro, ATLAS, Collaboration

“…Several models of physics beyond the Standard Model predict neutral particles that decay into final states consisting of collimated jets of light leptons and…”
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Measurement of jet pT correlations in Pb + Pb and pp collisions at sNN=2.76 TeVwith the ATLAS detector by Aaboud, M, Åkesson, Torsten, Bocchetta, Simona, Bryngemark, Lene, Doglioni, Caterina, Hedberg, Vincent, Jarlskog, Göran, Kalderon, Charles, Lytken, Else, Mjörnmark, Ulf, Smirnova, Oxana, Viazlo, Oleksandr

“…Measurements of dijet pT correlations in Pb+Pb and pp collisions at a nucleon–nucleon centre-of-mass energy of sNN=2.76 TeV are presented. The measurements are…”
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Radiation hardness of the low gain avalanche diodes developed by NDL and IHEP in China by Fan, Y.Y., Alderweireldt, S., Agapopoulou, C., Atanov, N., Ayoub, M. Kassem, Caforio, D., Chen, H., Christie, S., da Costa, J.G., Cui, H., d’Amen, G., Davydov, Y., Kiuchi, R., Ferreira, A.S.C., Galloway, Z., Garau, M., García, L.C., Ge, J., Gee, C., Giacomini, G., Gkoukousis, V., Grieco, C., Guindon, S., Han, D., Han, S., Huang, Y., Jin, Y., Jing, M., Kuwertz, E., Labitan, C., Leite, M., Li, B., Liang, H., Liang, Z., Liu, B., Liu, J., Lockerby, M., Lyu, F., Makovec, N., Mazza, S.M., Martinez-Mckinney, F., Nikolic, I., Padilla, R., Qi, B., Ran, K., Ren, H., Rizzi, C., Rossi, E., Sacerdoti, S., Sadrozinski, H.F.-W., Saito, G.T., Schumm, B., Seiden, A., Shan, L., Shi, L., Tan, Y., Tricoli, A., Trincaz-Duvoid, S., Wilder, M., Wu, K., Wyatt, W., Shi, X., Yang, T., Yang, Y., Yu, C., Zhang, X., Zhao, L., Zhao, M., Zhao, Y., Zhao, Z., Zheng, X., Zhuang, X.

“…This paper studies the radiation hardness of low gain avalanche detector (LGAD) developed by the Novel Device Laboratory (NDL) in Beijing and the Institute of…”
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Charged-particle distributions in pp interactions at √s = 8 TeV measured with the ATLAS detector by Aad, G, Abbott, B., Abdallah, J, Abdinov, O, Abeloos, B, Aben, R, Åkesson, Torsten, Bocchetta, Simona, BRYNGEMARK, LENE, Doglioni, Caterina, Floderus, Anders, Hawkins, Anthony, Hedberg, Vincent, Ivarsson, Jenny, Jarlskog, Göran, Lytken, Else, Mjörnmark, Ulf, Smirnova, Oxana, Viazlo, Oleksandr

“…This paper presents measurements of distributions of charged particles which are produced in proton-proton collisions at a centre-of-mass energy of √s = 8 TeV…”
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