Search Results - "Guhlin, Joseph"

Germline progenitors and oocyte production in the honeybee queen ovary by Cullen, Georgia, Gilligan, Joshua B, Guhlin, Joseph G, Dearden, Peter K

“…Abstract Understanding the reproduction of honeybee queens is crucial to support populations of this economically important insect. Here we examine the…”
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Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments by Burghardt, Liana T., Epstein, Brendan, Guhlin, Joseph, Nelson, Matt S., Taylor, Margaret R., Young, Nevin D., Sadowsky, Michael J., Tiffin, Peter

“…Assays to accurately estimate relative fitness of bacteria growing in multistrain communities can advance our understanding of how selection shapes diversity…”
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Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus by Inwood, Sarah N, Skelly, John, Guhlin, Joseph G, Harrop, Thomas W R, Goldson, Stephen L, Dearden, Peter K

“…Biocontrol is a key technology for the control of pest species. Microctonus parasitoid wasps (Hymenoptera: Braconidae) have been released in Aotearoa New…”
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Galba: genome annotation with miniprot and AUGUSTUS by Brůna, Tomáš, Li, Heng, Guhlin, Joseph, Honsel, Daniel, Herbold, Steffen, Stanke, Mario, Nenasheva, Natalia, Ebel, Matthis, Gabriel, Lars, Hoff, Katharina J

“…The Earth Biogenome Project has rapidly increased the number of available eukaryotic genomes, but most released genomes continue to lack annotation of…”
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Capturing species‐wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō by West, Annie G., Digby, Andrew, Santure, Anna W., Guhlin, Joseph G., Dearden, Peter, Kākāpō Recovery Team, Taylor, Michael W., Urban, Lara

“…Gut microbiota play an essential role in host health with important implications for conservation management of threatened wildlife. While factors such as…”
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The promise and challenges of characterizing genome-wide structural variants: A case study in a critically endangered parrot by Wold, Jana R, Guhlin, Joseph G, Dearden, Peter K, Santure, Anna W, Steeves, Tammy E

“…There is growing interest in the role of structural variants (SVs) as drivers of local adaptation and speciation. From a biodiversity genomics perspective, the…”
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Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation by Curtin, Shaun J., Tiffin, Peter, Guhlin, Joseph, Trujillo, Diana, Burghart, Liana, Atkins, Paul, Baltes, Nicholas J., Denny, Roxanne, Voytas, Daniel F., Stupar, Robert M., Young, Nevin D.

“…Genome-wide association (GWA) studies offer the opportunity to identify genes that contribute to naturally occurring variation in quantitative traits. However,…”
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Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes by Zhou, Peng, Silverstein, Kevin A T, Ramaraj, Thiruvarangan, Guhlin, Joseph, Denny, Roxanne, Liu, Junqi, Farmer, Andrew D, Steele, Kelly P, Stupar, Robert M, Miller, Jason R, Tiffin, Peter, Mudge, Joann, Young, Nevin D

“…Previous studies exploring sequence variation in the model legume, Medicago truncatula, relied on mapping short reads to a single reference. However,…”
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Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application) by Zhou, Peng, Silverstein, Kevin At, Gao, Liangliang, Walton, Jonathan D, Nallu, Sumitha, Guhlin, Joseph, Young, Nevin D

“…Small peptides encoded as one- or two-exon genes in plants have recently been shown to affect multiple aspects of plant development, reproduction and defense…”
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ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding by Guhlin, Joseph, Silverstein, Kevin A T, Zhou, Peng, Tiffin, Peter, Young, Nevin D

“…Rapid generation of omics data in recent years have resulted in vast amounts of disconnected datasets without systemic integration and knowledge building,…”
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Hidden impacts of conservation management on fertility of the critically endangered kākāpō by Digby, Andrew, Eason, Daryl, Catalina, Alejandro, Lierz, Michael, Galla, Stephanie, Urban, Lara, Le Lec, Marissa F, Guhlin, Joseph, Steeves, Tammy E, Dearden, Peter K, Joustra, Tineke, Lees, Caroline, Davis, Tane, Vercoe, Deidre

“…Animal conservation often requires intensive management actions to improve reproductive output, yet any adverse effects of these may not be immediately…”
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Corrigendum to "High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus" by Harrop, Thomas W R, Guhlin, Joseph, McLaughlin, Gemma M, Permina, Elizabeth, Stockwell, Peter, Gilligan, Josh, Le Lec, Marissa F, Gruber, Monica A M, Quinn, Oliver, Lovegrove, Mackenzie, Duncan, Elizabeth J, Remnant, Emily J, Eeckhoven, Jens Van, Graham, Brittany, Knapp, Rosemary A, Langford, Kyle W, Kronenberg, Zev, Press, Maximilian O, Eacker, Stephen M, Wilson-Rankin, Erin E, Purcell, Jessica, Lester, Philip J, Dearden, Peter K

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The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901 by Guerrero, Felix D., Bendele, Kylie G., Ghaffari, Noushin, Guhlin, Joseph, Gedye, Kristene R., Lawrence, Kevin E., Dearden, Peter K., Harrop, Thomas W.R., Heath, Allen C.G., Lun, Yanni, Metz, Richard P., Teel, Pete, Perez de Leon, Adalberto, Biggs, Patrick J., Pomroy, William E., Johnson, Charles D., Blood, Philip D., Bellgard, Stanley E., Tompkins, Daniel M.

“…The longhorned tick, Haemaphysalis longicornis, feeds upon a wide range of bird and mammalian hosts. Mammalian hosts include cattle, deer, sheep, goats,…”
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Genomics Reveals Widespread Ecological Speciation in Flightless Insects by McCulloch, Graham A, Foster, Brodie J, Dutoit, Ludovic, Harrop, Thomas W R, Guhlin, Joseph, Dearden, Peter K, Waters, Jonathan M

“…Abstract Recent genomic analyses have highlighted parallel divergence in response to ecological gradients, but the extent to which altitude can underpin such…”
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Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern by Wold, Jana, Koepfli, Klaus‐Peter, Galla, Stephanie J., Eccles, David, Hogg, Carolyn J., Le Lec, Marissa F., Guhlin, Joseph, Santure, Anna W., Steeves, Tammy E.

“…Structural variants (SVs) are large rearrangements (>50 bp) within the genome that impact gene function and the content and structure of chromosomes. As a…”
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The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps by Lester, Philip J., Bulgarella, Mariana, Baty, James W., Dearden, Peter K., Guhlin, Joseph, Kean, John M.

“…CRISPR gene drives have potential for widespread and cost-efficient pest control, but are highly controversial. We examined a potential gene drive targeting…”
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The genetic basis of the kakapÅ structural color polymorphism suggests balancing selection by an extinct apex predator by Urban, Lara, Santure, Anna W, Uddstrom, Lydia, Digby, Andrew, Vercoe, Deidre, Eason, Daryl, Crane, Jodie, Wylie, Matthew J, Davis, Tane, LeLec, Marissa F, Guhlin, Joseph, Poulton, Simon, Slate, Jon, Alexander, Alana, Fuentes-Cross, Patricia, Dearden, Peter K, Gemmell, Neil J, Azeem, Farhan, Weyland, Marvin, Schwefel, Harald G. L, van Oosterhout, Cock, Morales, Hernán E

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Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics by Bailey, Sarah, Guhlin, Joseph, Senanayake, Dinindu S, Scherer, Phoebe, Brekke, Patricia, Ewen, John G, Santure, Anna W, Whibley, Annabel

“…A high-quality reference genome can be a valuable resource for threatened species by providing a foundation to assess their evolutionary potential to adapt to…”
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Transcriptomic basis of genome by genome variation in a legume‐rhizobia mutualism by Burghardt, Liana T., Guhlin, Joseph, Chun, Chan Lan, Liu, Junqi, Sadowsky, Michael J., Stupar, Robert M., Young, Nevin D., Tiffin, Peter

“…In the legume‐rhizobia mutualism, the benefit each partner derives from the other depends on the genetic identity of both host and rhizobial symbiont. To gain…”
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Genomic signatures of parallel alpine adaptation in recently evolved flightless insects by McCulloch, Graham A., Guhlin, Joseph, Dutoit, Ludovic, Harrop, Thomas W. R., Dearden, Peter K., Waters, Jonathan M.

“…Natural selection along elevational gradients has potential to drive predictable adaptations across distinct lineages, but the extent of such repeated…”
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