Search Results - "Goncalves, Arlan da Silva"
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FPolymer: A Program for 3D Structure Generation and OPLS Topology of Polymers with High Molecular Mass
Published in Orbital : The Electronic Journal of Chemistry (01-01-2022)“…The need to study polymeric systems with high molecular masses by techniques such as molecular dynamics using free-use software, coupled with the difficulty of…”
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In silico identification of novel allosteric inhibitors of Dengue virus NS2B/NS3 serine protease
Published in Journal of the Serbian Chemical Society (2022)“…Although dengue is a disease that affects more than 100 countries and puts almost 400 million lives at risk each year, there is no approved antiviral in the…”
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The Use of Factorial Planning in the Investigation of Structural Electronics Property for the Rational Design of Benzophenone Derivatives
Published in Orbital : The Electronic Journal of Chemistry (01-07-2022)“…Human exposure to ultraviolet (UV) radiation leads photochemical excitation processes in the skin, causing problems to human health. The use of photoprotectors…”
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Molecular Modeling Study of Uncharged Oximes Compared to HI‑6 and 2‑PAM Inside Human AChE Sarin and VX Conjugates
Published in ACS omega (10-03-2020)“…The deleterious effects of nerve agents over the enzymes acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) turned these compounds into the most…”
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The relationship between the antimicrobial activity of eugenol and the LPETG peptide structure and associated analysis for docking purposes
Published in Chemical papers (01-10-2017)“…Sortase A is responsible for the virulence of Gram-positive pathogens, including staphylococci and streptococci. The LPETG is the peptide surface anchor signal…”
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Theoretical investigations of human acetylcholinesterase inhibition efficiency by neurotoxic organophosphorus compounds
Published in Chemical physics letters (16-08-2018)“…[Display omitted] •Study of the reactivity of nerve agents (NAs) using theoretical methods.•Energy gap is correlated with the lethality and physicochemical…”
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Conformational Analysis of Toxogonine, TMB-4 and HI-6 using PM6 and RM1 methods
Published in Journal of the Brazilian Chemical Society (2010)“…In this work, after validation by comparison with results obtained by DFT, the semi-empirical methods RM1 and PM6 were employed to perform conformational…”
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Computational studies of acetylcholinesterase complexed with fullerene derivatives: a new insight for Alzheimer disease treatment
Published in Journal of biomolecular structure & dynamics (01-06-2016)“…Here, we propose five fullerene (C60) derivatives as new drugs against Alzheimer's disease (AD). These compounds were designed to act as new human…”
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The photobleaching of the free and encapsulated metallic phthalocyanine and its effect on the photooxidation of simple molecules
Published in Journal of photochemistry and photobiology. B, Biology (01-12-2016)“…The photobleaching of an unsubstituted phthalocyanine (gallium(III) phthalocyanine chloride (GaPc)) and a substituted phthalocyanine…”
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Molecular dynamics simulations and QM/MM studies of the reactivation by 2-PAM of tabun inhibited human acethylcolinesterase
Published in Journal of the Brazilian Chemical Society (01-01-2011)“…The elucidation of the reactivation routes of human acetylcholinesterase (HuAChE) inhibited by organophosphorous compounds is of crucial importance to the…”
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Computational Studies of Fullerene Derivatives as Pesticide Captors
Published in Orbital : The Electronic Journal of Chemistry (01-01-2019)“…The use of pesticides in tropical countries such as Brazil has grown resulting in alarming health damage statistics, deaths and environmental pollution…”
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Insights into β-amyloid transition prevention by cucurbit[7]uril from molecular modeling
Published in Journal of biomolecular structure & dynamics (2022)“…In this study, comparable molecular dynamic (MD) simulations of 1.2 microseconds were performed to clarify the prevention of the β-amyloid peptide (Aβ 1-42 )…”
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Reactivation steps by 2-PAM of tabun-inhibited human acetylcholinesterase: reducing the computational cost in hybrid QM/MM methods
Published in Journal of biomolecular structure & dynamics (01-02-2014)“…The present work describes a simple integrated Quantum Mechanics/Molecular Mechanics method developed to study the reactivation steps by pralidoxime (2-PAM) of…”
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Interaction effects between macromolecules and photosensitizer on the ability of AlPc and InPc-loaded PHB magnetic nanoparticles in photooxidatizing simple biomolecules
Published in International journal of biological macromolecules (01-07-2022)“…The parameters used in the preparation of polymeric nanoparticles can influence its ability to photooxidate biomolecules. This work evaluated the effects of…”
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Computational studies of mucin 2 and its interactions with thiolated chitosans: a new insight for mucus adhesion and drug retention
Published in Journal of biomolecular structure & dynamics (23-03-2020)“…Chitosans have attracted the interest of the medicinal chemists as mucous adhesive excipients capable of increasing the residence period of drugs inside mucous…”
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Genetic characterization of the visual pigments of the red-eared turtle (Trachemys scripta elegans) and computational predictions of the spectral sensitivity
Published in Journal of photochemistry and photobiology (01-12-2022)“…•The red-eared turtle expresses five opsins genes in the retina: sws1, sws2, rh1, rh2, and lws.•Expression of the cyp27c1 gene in the retina indicates the use…”
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The role of the oximes HI-6 and HS-6 inside human acetylcholinesterase inhibited with nerve agents: a computational study
Published in Journal of biomolecular structure & dynamics (03-10-2018)“…The oximes 4-carbamoyl-1-[({2-[(E)-(hydroxyimino) methyl] pyridinium-1-yl} methoxy) methyl] pyridinium (known as HI-6) and…”
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Analysis of Coxiela burnetti dihydrofolate reductase via in silico docking with inhibitors and molecular dynamics simulation
Published in Journal of biomolecular structure & dynamics (03-10-2017)“…Coxiella burnetii is a gram-negative bacterium able to infect several eukaryotic cells, mainly monocytes and macrophages. It is found widely in nature with…”
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Flavanones: A potential natural inhibitor of the ATP binding site of PknG of Mycobacterium tuberculosis
Published in Journal of biomolecular structure & dynamics (01-01-2022)“…Over the years, Mycobacterium tuberculosis has been one of the major causes of death worldwide. As several clinical isolates of the bacteria have developed…”
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Complete chemical shift assignment and molecular modeling studies of two chromene derivatives as potential leads for new anticancer drugs
Published in Journal of biomolecular structure & dynamics (02-09-2021)“…The compounds 7-chloro-9-(2-hydroxy-4,4-dimethyl-6-oxocyclohex-1-en-1-yl)-3,3-dimethyl-2,3,4,9-tetrahydro-1H-xanthen-1-one (5) and 5-[-7-chloro-2,4-dioxo-1H,…”
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