Search Results - "Gillespie, Marc"

The reactome pathway knowledgebase by Jassal, Bijay, Matthews, Lisa, Viteri, Guilherme, Gong, Chuqiao, Lorente, Pascual, Fabregat, Antonio, Sidiropoulos, Konstantinos, Cook, Justin, Gillespie, Marc, Haw, Robin, Loney, Fred, May, Bruce, Milacic, Marija, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other…”
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The reactome pathway knowledgebase 2022 by Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of…”
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Reactome: a knowledge base of biologic pathways and processes by Vastrik, Imre, D'Eustachio, Peter, Schmidt, Esther, Joshi-Tope, Geeta, Gopinath, Gopal, Croft, David, de Bono, Bernard, Gillespie, Marc, Jassal, Bijay, Lewis, Suzanna, Matthews, Lisa, Wu, Guanming, Birney, Ewan, Stein, Lincoln

“…Reactome http://www.reactome.org, an online curated resource for human pathway data, provides infrastructure for computation across the biologic reaction…”
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SNARE complex‐mediated degranulation in mast cells by Woska, Joseph R., Gillespie, Marc E.

“…•  Introduction •  SNARE function in membrane fusion events •  Expression of SNAREs and SNARE complexes in mast cells •  Functional studies implicating…”
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Guidelines for the functional annotation of microRNAs using the Gene Ontology by Huntley, Rachael P, Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E, Howe, Doug, Kalea, Anastasia Z, Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R, Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C

“…MicroRNA regulation of developmental and cellular processes is a relatively new field of study, and the available research data have not been organized to…”
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Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes by Orlic-Milacic, Marija, Rothfels, Karen, Matthews, Lisa, Wright, Adam, Jassal, Bijay, Shamovsky, Veronica, Trinh, Quang, Gillespie, Marc E, Sevilla, Cristoffer, Tiwari, Krishna, Ragueneau, Eliot, Gong, Chuqiao, Stephan, Ralf, May, Bruce, Haw, Robin, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Hermjakob, Henning, Stein, Lincoln D, D'Eustachio, Peter, Wu, Guanming

“…Germline and somatic mutations can give rise to proteins with altered activity, including both gain and loss-of-function. The effects of these variants can be…”
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Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms by Ostaszewski, Marek, Mazein, Alexander, Gillespie, Marc E., Kuperstein, Inna, Niarakis, Anna, Hermjakob, Henning, Pico, Alexander R., Willighagen, Egon L., Evelo, Chris T., Hasenauer, Jan, Schreiber, Falk, Dräger, Andreas, Demir, Emek, Wolkenhauer, Olaf, Furlong, Laura I., Barillot, Emmanuel, Dopazo, Joaquin, Orta-Resendiz, Aurelio, Messina, Francesco, Valencia, Alfonso, Funahashi, Akira, Kitano, Hiroaki, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms by Ostaszewski, Marek, Mazein, Alexander, Gillespie, Marc E., Kuperstein, Inna, Niarakis, Anna, Hermjakob, Henning, Pico, Alexander R., Willighagen, Egon L., Evelo, Chris T., Hasenauer, Jan, Schreiber, Falk, Dräger, Andreas, Demir, Emek, Wolkenhauer, Olaf, Furlong, Laura I., Barillot, Emmanuel, Dopazo, Joaquin, Orta-Resendiz, Aurelio, Messina, Francesco, Valencia, Alfonso, Funahashi, Akira, Kitano, Hiroaki, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

“…Researchers around the world join forces to reconstruct the molecular processes of the virus-host interactions aiming to combat the cause of the ongoing…”
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Gene Expression Analysis: Teaching Students to Do 30,000 Experiments at Once with Microarray by Carvalho, Felicia I, Johns, Christopher, Gillespie, Marc E

“…Genome scale experiments routinely produce large data sets that require computational analysis, yet there are few student-based labs that illustrate the design…”
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The Reactome Pathway Knowledgebase by Fabregat, Antonio, Jupe, Steven, Matthews, Lisa, Sidiropoulos, Konstantinos, Gillespie, Marc, Garapati, Phani, Haw, Robin, Jassal, Bijay, Korninger, Florian, May, Bruce, Milacic, Marija, Roca, Corina Duenas, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Viteri, Guilherme, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism, and other…”
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The Reactome pathway Knowledgebase by Fabregat, Antonio, Sidiropoulos, Konstantinos, Garapati, Phani, Gillespie, Marc, Hausmann, Kerstin, Haw, Robin, Jassal, Bijay, Jupe, Steven, Korninger, Florian, McKay, Sheldon, Matthews, Lisa, May, Bruce, Milacic, Marija, Rothfels, Karen, Shamovsky, Veronica, Webber, Marissa, Weiser, Joel, Williams, Mark, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter

“…The Reactome Knowledgebase (www.reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular…”
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The Reactome pathway knowledgebase by Croft, David, Mundo, Antonio Fabregat, Haw, Robin, Milacic, Marija, Weiser, Joel, Wu, Guanming, Caudy, Michael, Garapati, Phani, Gillespie, Marc, Kamdar, Maulik R, Jassal, Bijay, Jupe, Steven, Matthews, Lisa, May, Bruce, Palatnik, Stanislav, Rothfels, Karen, Shamovsky, Veronica, Song, Heeyeon, Williams, Mark, Birney, Ewan, Hermjakob, Henning, Stein, Lincoln, D'Eustachio, Peter

“…Reactome (http://www.reactome.org) is a manually curated open-source open-data resource of human pathways and reactions. The current version 46 describes 7088…”
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The Reactome Pathway Knowledgebase 2024 by Milacic, Marija, Beavers, Deidre, Conley, Patrick, Gong, Chuqiao, Gillespie, Marc, Griss, Johannes, Haw, Robin, Jassal, Bijay, Matthews, Lisa, May, Bruce, Petryszak, Robert, Ragueneau, Eliot, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Stephan, Ralf, Tiwari, Krishna, Varusai, Thawfeek, Weiser, Joel, Wright, Adam, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org), an Elixir and GCBR core biological data resource, provides manually curated molecular details of a…”
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Reactome: a database of reactions, pathways and biological processes by Croft, David, O'Kelly, Gavin, Wu, Guanming, Haw, Robin, Gillespie, Marc, Matthews, Lisa, Caudy, Michael, Garapati, Phani, Gopinath, Gopal, Jassal, Bijay, Jupe, Steven, Kalatskaya, Irina, Mahajan, Shahana, May, Bruce, Ndegwa, Nelson, Schmidt, Esther, Shamovsky, Veronica, Yung, Christina, Birney, Ewan, Hermjakob, Henning, D'Eustachio, Peter, Stein, Lincoln

“…Reactome (http://www.reactome.org) is a collaboration among groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York…”
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Using Reactome to build an autophagy mechanism knowledgebase by Varusai, Thawfeek Mohamed, Jupe, Steven, Sevilla, Cristoffer, Matthews, Lisa, Gillespie, Marc, Stein, Lincoln, Wu, Guanming, D'Eustachio, Peter, Metzakopian, Emmanouil, Hermjakob, Henning

“…The 21st century has revealed much about the fundamental cellular process of autophagy. Autophagy controls the catabolism and recycling of various cellular…”
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The BioPAX community standard for pathway data sharing by Bader, Gary D, Demir, Emek, Cary, Michael P, Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D'Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C, Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Özgün, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Cheung, Kei-Hoi, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H, Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S, Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Novère, Nicolas Le, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D, Sander, Chris

“…Incompatible data storage formats have hindered the sharing and analyses of digital representations of biological pathways. BioPAX is a standardized language…”
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Reactome knowledgebase of human biological pathways and processes by Matthews, Lisa, Gopinath, Gopal, Gillespie, Marc, Caudy, Michael, Croft, David, de Bono, Bernard, Garapati, Phani, Hemish, Jill, Hermjakob, Henning, Jassal, Bijay, Kanapin, Alex, Lewis, Suzanna, Mahajan, Shahana, May, Bruce, Schmidt, Esther, Vastrik, Imre, Wu, Guanming, Birney, Ewan, Stein, Lincoln, D'Eustachio, Peter

“…Reactome (http://www.reactome.org) is an expert-authored, peer-reviewed knowledgebase of human reactions and pathways that functions as a data mining resource…”
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Reactome: An integrated expert model of human molecular processes and access toolkit by Bono, Bernard de, Vastrik, Imre, D’Eustachio, Peter, Schmidt, Esther, Gopinath, Gopal, Croft, David, Gillespie, Marc, Jassal, Bijay, Lewis, Suzanna, Matthews, Lisa, Wu, Guanming, Birney, Ewan, Stein, Lincoln

“…The behaviour of pervasive molecular processes in human biology can be studied through the large-scale modeling of the molecular events that define them…”
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DNA binding by the ETS domain by Graves, Barbara J, Gillespie, Marc E, Mclntosh, Lawrence P

“…The ets gene family encodes eukaryotic transcription factors that bind specific DNA sequences through the highly conserved, 85-residue ETS domain. The…”
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Using the Reactome Database by Rothfels, Karen, Milacic, Marija, Matthews, Lisa, Haw, Robin, Sevilla, Cristoffer, Gillespie, Marc, Stephan, Ralf, Gong, Chuqiao, Ragueneau, Eliot, May, Bruce, Shamovsky, Veronica, Wright, Adam, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Tiwari, Krishna, Jassal, Bijay, Griss, Johannes, Senff-Ribeiro, Andrea, Brunson, Timothy, Petryszak, Robert, Hermjakob, Henning, D'Eustachio, Peter, Wu, Guanming, Stein, Lincoln

“…Pathway databases provide descriptions of the roles of proteins, nucleic acids, lipids, carbohydrates, and other molecular entities within their biological…”
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