Search Results - "Gevirtzman, Louis"

Matrix prior for data transfer between single cell data types in latent Dirichlet allocation by Min, Alan, Durham, Timothy, Gevirtzman, Louis, Noble, William Stafford

“…Single cell ATAC-seq (scATAC-seq) enables the mapping of regulatory elements in fine-grained cell types. Despite this advance, analysis of the resulting data…”
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The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors by Kudron, Michelle M, Victorsen, Alec, Gevirtzman, Louis, Hillier, LaDeana W, Fisher, William W, Vafeados, Dionne, Kirkey, Matt, Hammonds, Ann S, Gersch, Jeffery, Ammouri, Haneen, Wall, Martha L, Moran, Jennifer, Steffen, David, Szynkarek, Matt, Seabrook-Sturgis, Samantha, Jameel, Nader, Kadaba, Madhura, Patton, Jaeda, Terrell, Robert, Corson, Mitch, Durham, Timothy J, Park, Soo, Samanta, Swapna, Han, Mei, Xu, Jinrui, Yan, Koon-Kiu, Celniker, Susan E, White, Kevin P, Ma, Lijia, Gerstein, Mark, Reinke, Valerie, Waterston, Robert H

“…To develop a catalog of regulatory sites in two major model organisms, and , the modERN (model organism Encyclopedia of Regulatory Networks) consortium has…”
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The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution by Warner, Adam D, Gevirtzman, Louis, Hillier, LaDeana W, Ewing, Brent, Waterston, Robert H

“…We have used RNA-seq in to produce transcription profiles for seven specific embryonic cell populations from gastrulation to the onset of terminal…”
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Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes by Durham, Timothy J, Daza, Riza M, Gevirtzman, Louis, Cusanovich, Darren A, Bolonduro, Olubusayo, Noble, William Stafford, Shendure, Jay, Waterston, Robert H

“…Recently developed single-cell technologies allow researchers to characterize cell states at ever greater resolution and scale. is a particularly tractable…”
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Regulatory analysis of the C. elegans genome with spatiotemporal resolution by Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael

“…Discovering the structure and dynamics of transcriptional regulatory events in the genome with cellular and temporal resolution is crucial to understanding the…”
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A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi by Fisher, William W, Hammonds, Ann S, Weiszmann, Richard, Booth, Benjamin W, Gevirtzman, Louis, Patton, Jaeda E J, Kubo, Connor A, Waterston, Robert H, Celniker, Susan E

“…Abstract Transcription factors (TFs) play a key role in development and in cellular responses to the environment by activating or repressing the transcription…”
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To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq by Xu, Jinrui, Kudron, Michelle M, Victorsen, Alec, Gao, Jiahao, Ammouri, Haneen N, Navarro, Fabio C P, Gevirtzman, Louis, Waterston, Robert H, White, Kevin P, Reinke, Valerie, Gerstein, Mark

“…Abstract Chromatin immunoprecipitation (IP) followed by sequencing (ChIP-seq) is the gold standard to detect transcription-factor (TF) binding sites in the…”
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Whole-body gene expression atlas of an adult metazoan by Ghaddar, Abbas, Armingol, Erick, Huynh, Chau, Gevirtzman, Louis, Lewis, Nathan E, Waterston, Robert, O'Rourke, Eyleen J

“…Gene activity defines cell identity, drives intercellular communication, and underlies the functioning of multicellular organisms. We present the single-cell…”
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MIP-MAP: High-Throughput Mapping of Caenorhabditis elegans Temperature-Sensitive Mutants via Molecular Inversion Probes by Mok, Calvin A, Au, Vinci, Thompson, Owen A, Edgley, Mark L, Gevirtzman, Louis, Yochem, John, Lowry, Joshua, Memar, Nadin, Wallenfang, Matthew R, Rasoloson, Dominique, Bowerman, Bruce, Schnabel, Ralf, Seydoux, Geraldine, Moerman, Donald G, Waterston, Robert H

“…Mutants remain a powerful means for dissecting gene function in model organisms such as Massively parallel sequencing has simplified the detection of variants…”
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Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution by Araya, Carlos L, Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P, Xie, Dan, Ma, Lijia, Murray, John I, Reinke, Valerie, Waterston, Robert H, Snyder, Michael

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Correction: Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution by Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael

“…Nature 512, 400–405 (2014); doi:10.1038/nature13497 In this Article, when processing C. elegans ChIP-seq libraries, the gene label ZK337.2 (KLU-1, a C2H2…”
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Erratum: Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution by Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael

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A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans by Mace, Daniel L, Weisdepp, Peter, Gevirtzman, Louis, Boyle, Thomas, Waterston, Robert H

“…Advances in microscopy and fluorescent reporters have allowed us to detect the onset of gene expression on a cell-by-cell basis in a systemic fashion. This…”
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The injured colon by BURCH, J. M, BROCK, J. C, GEVIRTZMAN, L, FELICIANO, D. V, MATTOX, K. L, JORDAN, G. L. JR, DE BAKEY, M. E

“…Controversy continues regarding the initial management of civilian colon injuries. The main issues are the safety of colostomy versus the desirability of…”
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