Search Results - "Georgakilas, Georgios"

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions by Vlachos, Ioannis S, Paraskevopoulou, Maria D, Karagkouni, Dimitra, Georgakilas, Georgios, Vergoulis, Thanasis, Kanellos, Ilias, Anastasopoulos, Ioannis-Laertis, Maniou, Sofia, Karathanou, Konstantina, Kalfakakou, Despina, Fevgas, Athanasios, Dalamagas, Theodore, Hatzigeorgiou, Artemis G

“…microRNAs (miRNAs) are short non-coding RNA species, which act as potent gene expression regulators. Accurate identification of miRNA targets is crucial to…”
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Transcriptomic meta-analysis characterizes molecular commonalities between psoriasis and obesity by Antonatos, Charalabos, Georgakilas, Georgios K., Evangelou, Evangelos, Vasilopoulos, Yiannis

“…Despite the abundance of epidemiological evidence for the high comorbid rate between psoriasis and obesity, systematic approaches to common inflammatory…”
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DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data by Grigoriadis, Dimitris, Perdikopanis, Nikos, Georgakilas, Georgios K, Hatzigeorgiou, Artemis G

“…The widespread usage of Cap Analysis of Gene Expression (CAGE) has led to numerous breakthroughs in understanding the transcription mechanisms. Recent evidence…”
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DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs by Perdikopanis, Nikos, Georgakilas, Georgios K, Grigoriadis, Dimitris, Pierros, Vasilis, Kavakiotis, Ioannis, Alexiou, Panagiotis, Hatzigeorgiou, Artemis

“…Abstract Deregulation of microRNA (miRNA) expression plays a critical role in the transition from a physiological to a pathological state. The accurate miRNA…”
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Transcriptional repression of lncRNA and miRNA subsets mediated by LRF during erythropoiesis by Athanasopoulou, Katerina, Chondrou, Vasiliki, Xiropotamos, Panagiotis, Psarias, Georgios, Vasilopoulos, Yiannis, Georgakilas, Georgios K., Sgourou, Argyro

“…Non-coding RNA (ncRNA) species, mainly long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) have been currently imputed for lesser or greater involvement in…”
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Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data by Georgakilas, Georgios K., Perdikopanis, Nikos, Hatzigeorgiou, Artemis

“…Cap Analysis of Gene Expression (CAGE) has emerged as a powerful experimental technique for assisting in the identification of transcription start sites…”
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DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs by Paraskevopoulou, Maria D, Georgakilas, Georgios, Kostoulas, Nikos, Reczko, Martin, Maragkakis, Manolis, Dalamagas, Theodore M, Hatzigeorgiou, Artemis G

“…Recently, the attention of the research community has been focused on long non-coding RNAs (lncRNAs) and their physiological/pathological implications. As the…”
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Conventional and machine learning approaches as countermeasures against hardware trojan attacks by Liakos, Konstantinos G, Georgakilas, Georgios K, Moustakidis, Serafeim, Sklavos, Nicolas, Plessas, Fotis C

“…Every year, the rate at which technology is applied on areas of our everyday life is increasing at a steady pace. This rapid development drives the technology…”
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Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci by Georgakilas, Georgios K., Grioni, Andrea, Liakos, Konstantinos G., Chalupova, Eliska, Plessas, Fotis C., Alexiou, Panagiotis

“…Genomic regions that encode small RNA genes exhibit characteristic patterns in their sequence, secondary structure, and evolutionary conservation…”
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Gene Expression Meta-Analysis of Potential Shared and Unique Pathways between Autoimmune Diseases under Anti-TNFα Therapy by Antonatos, Charalabos, Panoutsopoulou, Mariza, Georgakilas, Georgios K, Evangelou, Evangelos, Vasilopoulos, Yiannis

“…While anti-TNFα has been established as an effective therapeutic approach for several autoimmune diseases, results from clinical trials have uncovered…”
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aPEAch: Automated Pipeline for End-to-End Analysis of Epigenomic and Transcriptomic Data by Xiropotamos, Panagiotis, Papageorgiou, Foteini, Manousaki, Haris, Sinnis, Charalampos, Antonatos, Charalabos, Vasilopoulos, Yiannis, Georgakilas, Georgios K

“…With the advent of next-generation sequencing (NGS), experimental techniques that capture the biological significance of DNA loci or RNA molecules have emerged…”
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A Cosine Similarity-Based Method to Infer Variability of Chromatin Accessibility at the Single-Cell Level by Cai, Stanley, Georgakilas, Georgios K, Johnson, John L, Vahedi, Golnaz

“…Cellular identity between generations of developing cells is propagated through the epigenome particularly via the accessible parts of the chromatin. It is now…”
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Contribution of the Environment, Epigenetic Mechanisms and Non-Coding RNAs in Psoriasis by Antonatos, Charalabos, Grafanaki, Katerina, Asmenoudi, Paschalia, Xiropotamos, Panagiotis, Nani, Paraskevi, Georgakilas, Georgios K, Georgiou, Sophia, Vasilopoulos, Yiannis

“…Despite the increasing research and clinical interest in the predisposition of psoriasis, a chronic inflammatory skin disease, the multitude of genetic and…”
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mirPub: a database for searching microRNA publications by Vergoulis, Thanasis, Kanellos, Ilias, Kostoulas, Nikos, Georgakilas, Georgios, Sellis, Timos, Hatzigeorgiou, Artemis, Dalamagas, Theodore

“…Identifying, amongst millions of publications available in MEDLINE, those that are relevant to specific microRNAs (miRNAs) of interest based on keyword search…”
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Machine-Learning-Assisted Analysis of TCR Profiling Data Unveils Cross-Reactivity between SARS-CoV-2 and a Wide Spectrum of Pathogens and Other Diseases by Georgakilas, Georgios K., Galanopoulos, Achilleas P., Tsinaris, Zafeiris, Kyritsi, Maria, Mouchtouri, Varvara A., Speletas, Matthaios, Hadjichristodoulou, Christos

“…During the last two years, the emergence of SARS-CoV-2 has led to millions of deaths worldwide, with a devastating socio-economic impact on a global scale. The…”
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Pharmacogenetic Analysis of the MIR146A rs2910164 and MIR155 rs767649 Polymorphisms and Response to Anti-TNF Treatment in Patients with Crohn's Disease and Psoriasis by Nani, Paraskevi, Ladopoulou, Melpomeni, Papaioannou, Evgenia H, Papagianni, Evangelia D, Antonatos, Charalabos, Xiropotamos, Panagiotis, Kapsoritakis, Andreas, Potamianos, Petros S, Karmiris, Konstantinos, Tzathas, Charalambos, Patsatsi, Aikaterini, Lazaridou, Elisavet, Zafiriou, Efterpi, Roussaki-Schulze, Angeliki, Georgiou, Sophia, Grafanaki, Katerina, Georgakilas, Georgios K, Vasilopoulos, Yiannis

“…The clinical heterogeneity regarding the response profile of the antitumor necrosis factor (anti-TNF) in patients with Crohn's disease (CD) and psoriasis (PsO)…”
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DIANA-miRPath v3.0: deciphering microRNA function with experimental support by Vlachos, Ioannis S, Zagganas, Konstantinos, Paraskevopoulou, Maria D, Georgakilas, Georgios, Karagkouni, Dimitra, Vergoulis, Thanasis, Dalamagas, Theodore, Hatzigeorgiou, Artemis G

“…The functional characterization of miRNAs is still an open challenge. Here, we present DIANA-miRPath v3.0 (http://www.microrna.gr/miRPathv3) an online software…”
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Hardware Trojan Classification at Gate-level Netlists based on Area and Power Machine Learning Analysis by Liakos, Konstantinos G, Georgakilas, Georgios K, Plessas, Fotis C

“…The 21 st century has been characterized by incredible technological advancements. A key factor of this revolution is the ever-growing circuits complexity that…”
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Machine Learning for Hardware Trojan Detection: A Review by Liakos, Konstantinos G, Georgakilas, Georgios K, Moustakidis, Serafeim, Karlsson, Patrik, Plessas, Fotis C

“…Every year, the rate at which technology is applied on areas of our everyday life is increasing at a steady pace. This rapid development drives the technology…”
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DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts by Paraskevopoulou, Maria D, Vlachos, Ioannis S, Karagkouni, Dimitra, Georgakilas, Georgios, Kanellos, Ilias, Vergoulis, Thanasis, Zagganas, Konstantinos, Tsanakas, Panayiotis, Floros, Evangelos, Dalamagas, Theodore, Hatzigeorgiou, Artemis G

“…microRNAs (miRNAs) are short non-coding RNAs (ncRNAs) that act as post-transcriptional regulators of coding gene expression. Long non-coding RNAs (lncRNAs)…”
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