Search Results - "Garcia Accinelli, Gonzalo"

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies by Mapleson, Daniel, Garcia Accinelli, Gonzalo, Kettleborough, George, Wright, Jonathan, Clavijo, Bernardo J

“…De novo assembly of whole genome shotgun (WGS) next-generation sequencing (NGS) data benefits from high-quality input with high coverage. However, in practice,…”
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Genomic architecture and introgression shape a butterfly radiation by Edelman, Nathaniel B, Frandsen, Paul B, Miyagi, Miriam, Clavijo, Bernardo, Davey, John, Dikow, Rebecca B, García-Accinelli, Gonzalo, Van Belleghem, Steven M, Patterson, Nick, Neafsey, Daniel E, Challis, Richard, Kumar, Sujai, Moreira, Gilson R P, Salazar, Camilo, Chouteau, Mathieu, Counterman, Brian A, Papa, Riccardo, Blaxter, Mark, Reed, Robert D, Dasmahapatra, Kanchon K, Kronforst, Marcus, Joron, Mathieu, Jiggins, Chris D, McMillan, W Owen, Di Palma, Federica, Blumberg, Andrew J, Wakeley, John, Jaffe, David, Mallet, James

“…We used 20 de novo genome assemblies to probe the speciation history and architecture of gene flow in rapidly radiating butterflies. Our tests to distinguish…”
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A Sequence Distance Graph framework for genome assembly and analysis [version 1; peer review: awaiting peer review] by Yanes, Luis, Garcia Accinelli, Gonzalo, Wright, Jonathan, Ward, Ben J, Clavijo, Bernardo J

“…The Sequence Distance Graph (SDG) framework works with genome assembly graphs and raw data from paired, linked and long reads. It includes a simple deBruijn…”
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Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data by Jiao, Wen-Biao, Accinelli, Gonzalo Garcia, Hartwig, Benjamin, Kiefer, Christiane, Baker, David, Severing, Edouard, Willing, Eva-Maria, Piednoel, Mathieu, Woetzel, Stefan, Madrid-Herrero, Eva, Huettel, Bruno, Hümann, Ulrike, Reinhard, Richard, Koch, Marcus A, Swan, Daniel, Clavijo, Bernardo, Coupland, George, Schneeberger, Korbinian

“…Long-read sequencing can overcome the weaknesses of short reads in the assembly of eukaryotic genomes; however, at present additional scaffolding is needed to…”
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A method to simultaneously construct up to 12 differently sized Illumina Nextera long mate pair libraries with reduced DNA input, time, and cost by Heavens, Darren, Accinelli, Gonzalo Garcia, Clavijo, Bernardo, Clark, Matthew Derek

“…Long mate pair (LMP) or "jump" libraries are invaluable for producing contiguous genome assemblies and assessing structural variation. However the consistent…”
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Multiple wheat genomes reveal global variation in modern breeding by Walkowiak, Sean, Gao, Liangliang, Monat, Cecile, Haberer, Georg, Kassa, Mulualem T., Brinton, Jemima, Ramirez-Gonzalez, Ricardo H., Kolodziej, Markus C., Delorean, Emily, Thambugala, Dinushika, Klymiuk, Valentyna, Byrns, Brook, Gundlach, Heidrun, Bandi, Venkat, Siri, Jorge Nunez, Nilsen, Kirby, Aquino, Catharine, Himmelbach, Axel, Copetti, Dario, Ban, Tomohiro, Venturini, Luca, Bevan, Michael, Clavijo, Bernardo, Koo, Dal-Hoe, Ens, Jennifer, Wiebe, Krystalee, N’Diaye, Amidou, Fritz, Allen K., Gutwin, Carl, Fiebig, Anne, Fosker, Christine, Fu, Bin Xiao, Accinelli, Gonzalo Garcia, Gardner, Keith A., Fradgley, Nick, Gutierrez-Gonzalez, Juan, Halstead-Nussloch, Gwyneth, Hatakeyama, Masaomi, Koh, Chu Shin, Deek, Jasline, Costamagna, Alejandro C., Fobert, Pierre, Heavens, Darren, Kanamori, Hiroyuki, Kawaura, Kanako, Kobayashi, Fuminori, Krasileva, Ksenia, Kuo, Tony, McKenzie, Neil, Murata, Kazuki, Nabeka, Yusuke, Paape, Timothy, Padmarasu, Sudharsan, Percival-Alwyn, Lawrence, Kagale, Sateesh, Scholz, Uwe, Sese, Jun, Juliana, Philomin, Singh, Ravi, Shimizu-Inatsugi, Rie, Swarbreck, David, Cockram, James, Budak, Hikmet, Tameshige, Toshiaki, Tanaka, Tsuyoshi, Tsuji, Hiroyuki, Wright, Jonathan, Wu, Jianzhong, Steuernagel, Burkhard, Small, Ian, Cloutier, Sylvie, Keeble-Gagnère, Gabriel, Muehlbauer, Gary, Tibbets, Josquin, Nasuda, Shuhei, Melonek, Joanna, Hucl, Pierre J., Sharpe, Andrew G., Clark, Matthew, Legg, Erik, Bharti, Arvind, Langridge, Peter, Hall, Anthony, Uauy, Cristobal, Mascher, Martin, Krattinger, Simon G., Handa, Hirokazu, Shimizu, Kentaro K., Distelfeld, Assaf, Chalmers, Ken, Keller, Beat, Mayer, Klaus F. X., Poland, Jesse, Stein, Nils, McCartney, Curt A., Spannagl, Manuel, Wicker, Thomas, Pozniak, Curtis J.

“…Advances in genomics have expedited the improvement of several agriculturally important crops but similar efforts in wheat ( Triticum spp.) have been more…”
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An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations by Clavijo, Bernardo J, Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H, Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M, Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P, Fosker, Christine, Palma, Federica Di, Phillips, Andrew L, Millar, A Harvey, Kersey, Paul J, Uauy, Cristobal, Krasileva, Ksenia V, Swarbreck, David, Bevan, Michael W, Clark, Matthew D

“…Advances in genome sequencing and assembly technologies are generating many high-quality genome sequences, but assemblies of large, repeat-rich polyploid…”
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The ash dieback invasion of Europe was founded by two genetically divergent individuals by McMullan, Mark, Rafiqi, Maryam, Kaithakottil, Gemy, Clavijo, Bernardo J., Bilham, Lorelei, Orton, Elizabeth, Percival-Alwyn, Lawrence, Ward, Ben J., Edwards, Anne, Saunders, Diane G. O., Garcia Accinelli, Gonzalo, Wright, Jonathan, Verweij, Walter, Koutsovoulos, Georgios, Yoshida, Kentaro, Hosoya, Tsuyoshi, Williamson, Louisa, Jennings, Philip, Ioos, Renaud, Husson, Claude, Hietala, Ari M., Vivian-Smith, Adam, Solheim, Halvor, MaClean, Dan, Fosker, Christine, Hall, Neil, Brown, James K. M., Swarbreck, David, Blaxter, Mark, Downie, J. Allan, Clark, Matthew D.

“…Accelerating international trade and climate change make pathogen spread an increasing concern. Hymenoscyphus fraxineus , the causal agent of ash dieback, is a…”
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